Information for 1-YKCAGTSAWGCGGAAR (Motif 1)

A G C T A C G T G A T C C T G A A T C G A G C T A T G C C T G A C G T A A T C G A G T C C T A G A C T G T C G A T G C A C T G A
Reverse Opposite:
G A C T A C G T A G C T G T A C G A T C C T A G A T G C G C A T A G C T A T C G C T G A T A G C A G C T C T A G T G C A T C G A
p-value:1e-59
log p-value:-1.370e+02
Information Content per bp:1.627
Number of Target Sequences with motif46.0
Percentage of Target Sequences with motif6.39%
Number of Background Sequences with motif64.7
Percentage of Background Sequences with motif0.14%
Average Position of motif in Targets47.7 +/- 16.9bp
Average Position of motif in Background46.3 +/- 30.6bp
Strand Bias (log2 ratio + to - strand density)-0.1
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PAX6(Paired,Homeobox)/Forebrain-Pax6-ChIP-Seq(GSE66961)/Homer

Match Rank:1
Score:0.91
Offset:-4
Orientation:forward strand
Alignment:----YKCAGTSAWGCGGAAR
NGTGTTCAVTSAAGCGKAAA
 A C G T A C G T A C G T A C G T A G C T A C G T G A T C C T G A A T C G A G C T A T G C C T G A C G T A A T C G A G T C C T A G A C T G T C G A T G C A C T G A
A G C T T A C G C G A T T C A G A G C T A C G T G A T C C T G A T A G C A G C T A T G C C T G A C G T A A T C G A G T C C T A G A C T G C T G A G T C A T C G A

Pax6/MA0069.1/Jaspar

Match Rank:2
Score:0.80
Offset:2
Orientation:reverse strand
Alignment:YKCAGTSAWGCGGAAR
--AANTCATGCGTGAA
 A G C T A C G T G A T C C T G A A T C G A G C T A T G C C T G A C G T A A T C G A G T C C T A G A C T G T C G A T G C A C T G A
A C G T A C G T G T C A T C G A A G T C G A C T A T G C C T G A C G A T A T C G G A T C C T A G A C G T C T A G C G T A T C G A

Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer

Match Rank:3
Score:0.72
Offset:1
Orientation:reverse strand
Alignment:YKCAGTSAWGCGGAAR
-SCAGYCADGCATGAC
 A G C T A C G T G A T C C T G A A T C G A G C T A T G C C T G A C G T A A T C G A G T C C T A G A C T G T C G A T G C A C T G A
A C G T A T C G G T A C C G T A A T C G A G C T A T G C C G T A C T A G A T C G A G T C T C G A C A G T T C A G T C G A T G A C

PAX5(Paired,Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer

Match Rank:4
Score:0.72
Offset:1
Orientation:forward strand
Alignment:YKCAGTSAWGCGGAAR-
-GCAGCCAAGCGTGACN
 A G C T A C G T G A T C C T G A A T C G A G C T A T G C C T G A C G T A A T C G A G T C C T A G A C T G T C G A T G C A C T G A A C G T
A C G T A C T G G A T C C T G A A T C G A G T C T A G C C T G A C G T A T A C G A G T C C T A G C A G T T C A G T C G A T G A C G A T C

PAX9/MA0781.1/Jaspar

Match Rank:5
Score:0.71
Offset:0
Orientation:reverse strand
Alignment:YKCAGTSAWGCGGAAR-
TGCAGTCATGCGTGACG
 A G C T A C G T G A T C C T G A A T C G A G C T A T G C C T G A C G T A A T C G A G T C C T A G A C T G T C G A T G C A C T G A A C G T
C A G T A C T G G T A C C T G A A T C G A G C T A T G C C T G A C G A T A T C G A G T C C T A G A C G T C T A G C G T A G T A C T A C G

PAX1/MA0779.1/Jaspar

Match Rank:6
Score:0.71
Offset:0
Orientation:reverse strand
Alignment:YKCAGTSAWGCGGAAR-
NGCANTCATGCGTGACG
 A G C T A C G T G A T C C T G A A T C G A G C T A T G C C T G A C G T A A T C G A G T C C T A G A C T G T C G A T G C A C T G A A C G T
C A G T A C T G G T A C C T G A A T C G A G C T T A G C C T G A C G A T A T C G G A T C C T A G A C G T C T A G C G T A G T A C T A C G

PAX5/MA0014.2/Jaspar

Match Rank:7
Score:0.69
Offset:-3
Orientation:forward strand
Alignment:---YKCAGTSAWGCGGAAR
GAGGGCAGCCAAGCGTGAC
 A C G T A C G T A C G T A G C T A C G T G A T C C T G A A T C G A G C T A T G C C T G A C G T A A T C G A G T C C T A G A C T G T C G A T G C A C T G A
T C A G C G T A T C A G C T A G A C T G G A T C C T G A T A C G A G T C T A G C T C G A C T G A A T C G A G T C C T A G C A G T C T A G C T G A G T A C

bZIP:IRF(bZIP,IRF)/Th17-BatF-ChIP-Seq(GSE39756)/Homer

Match Rank:8
Score:0.55
Offset:1
Orientation:reverse strand
Alignment:YKCAGTSAWGCGGAAR---
-WNAGTCADAVTGAAACTN
 A G C T A C G T G A T C C T G A A T C G A G C T A T G C C T G A C G T A A T C G A G T C C T A G A C T G T C G A T G C A C T G A A C G T A C G T A C G T
A C G T G C A T T A C G C G T A A T C G G C A T T A G C G C T A C G T A G C T A T G C A C G A T T C A G C T G A T C G A T C G A T A G C G A C T T C A G

ELF1(ETS)/Jurkat-ELF1-ChIP-Seq(SRA014231)/Homer

Match Rank:9
Score:0.55
Offset:7
Orientation:forward strand
Alignment:YKCAGTSAWGCGGAAR-
-------ANCCGGAAGT
 A G C T A C G T G A T C C T G A A T C G A G C T A T G C C T G A C G T A A T C G A G T C C T A G A C T G T C G A T G C A C T G A A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T C T G A T G C A T A G C T G A C T A C G T C A G C T G A G C T A T C A G G A C T

ETV2/MA0762.1/Jaspar

Match Rank:10
Score:0.55
Offset:7
Orientation:forward strand
Alignment:YKCAGTSAWGCGGAAR--
-------AACCGGAAATA
 A G C T A C G T G A T C C T G A A T C G A G C T A T G C C T G A C G T A A T C G A G T C C T A G A C T G T C G A T G C A C T G A A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T C T G A T C G A T A G C T G A C A C T G A C T G C G T A G C T A T C G A A G C T C T G A