Rank | Motif | Name | P-value | log P-pvalue | q-value (Benjamini) | # Target Sequences with Motif | % of Targets Sequences with Motif | # Background Sequences with Motif | % of Background Sequences with Motif | Motif File |
SVG |
1 |
| CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer | 1e-157 | -3.616e+02 | 0.0000 | 419.0 | 67.26% | 8361.2 | 18.32% | motif file (matrix) |
svg |
2 |
| Otx2(Homeobox)/EpiLC-Otx2-ChIP-Seq(GSE56098)/Homer | 1e-151 | -3.491e+02 | 0.0000 | 264.0 | 42.38% | 2678.2 | 5.87% | motif file (matrix) |
svg |
3 |
| GSC(Homeobox)/FrogEmbryos-GSC-ChIP-Seq(DRA000576)/Homer | 1e-146 | -3.371e+02 | 0.0000 | 301.0 | 48.31% | 3956.7 | 8.67% | motif file (matrix) |
svg |
4 |
| Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer | 1e-106 | -2.456e+02 | 0.0000 | 465.0 | 74.64% | 14434.3 | 31.63% | motif file (matrix) |
svg |
5 |
| Gata4(Zf)/Heart-Gata4-ChIP-Seq(GSE35151)/Homer | 1e-41 | -9.530e+01 | 0.0000 | 151.0 | 24.24% | 3153.6 | 6.91% | motif file (matrix) |
svg |
6 |
| GATA3(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer | 1e-41 | -9.480e+01 | 0.0000 | 186.0 | 29.86% | 4656.5 | 10.21% | motif file (matrix) |
svg |
7 |
| Gata6(Zf)/HUG1N-GATA6-ChIP-Seq(GSE51936)/Homer | 1e-36 | -8.291e+01 | 0.0000 | 133.0 | 21.35% | 2779.7 | 6.09% | motif file (matrix) |
svg |
8 |
| Gata2(Zf)/K562-GATA2-ChIP-Seq(GSE18829)/Homer | 1e-32 | -7.433e+01 | 0.0000 | 108.0 | 17.34% | 2051.3 | 4.50% | motif file (matrix) |
svg |
9 |
| Gata1(Zf)/K562-GATA1-ChIP-Seq(GSE18829)/Homer | 1e-29 | -6.840e+01 | 0.0000 | 97.0 | 15.57% | 1795.9 | 3.94% | motif file (matrix) |
svg |
10 |
| Eomes(T-box)/H9-Eomes-ChIP-Seq(GSE26097)/Homer | 1e-19 | -4.414e+01 | 0.0000 | 160.0 | 25.68% | 5600.3 | 12.27% | motif file (matrix) |
svg |
11 |
| Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer | 1e-17 | -4.080e+01 | 0.0000 | 60.0 | 9.63% | 1141.6 | 2.50% | motif file (matrix) |
svg |
12 |
| Tbr1(T-box)/Cortex-Tbr1-ChIP-Seq(GSE71384)/Homer | 1e-17 | -4.059e+01 | 0.0000 | 111.0 | 17.82% | 3309.7 | 7.25% | motif file (matrix) |
svg |
13 |
| Prop1(Homeobox)/GHFT1-PROP1.biotin-ChIP-Seq(GSE77302)/Homer | 1e-15 | -3.680e+01 | 0.0000 | 68.0 | 10.91% | 1558.7 | 3.42% | motif file (matrix) |
svg |
14 |
| Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer | 1e-14 | -3.339e+01 | 0.0000 | 108.0 | 17.34% | 3521.7 | 7.72% | motif file (matrix) |
svg |
15 |
| Phox2a(Homeobox)/Neuron-Phox2a-ChIP-Seq(GSE31456)/Homer | 1e-14 | -3.317e+01 | 0.0000 | 51.0 | 8.19% | 1011.9 | 2.22% | motif file (matrix) |
svg |
16 |
| Foxa2(Forkhead)/Liver-Foxa2-ChIP-Seq(GSE25694)/Homer | 1e-14 | -3.248e+01 | 0.0000 | 63.0 | 10.11% | 1497.9 | 3.28% | motif file (matrix) |
svg |
17 |
| Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer | 1e-13 | -3.213e+01 | 0.0000 | 56.0 | 8.99% | 1229.0 | 2.69% | motif file (matrix) |
svg |
18 |
| Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer | 1e-13 | -3.094e+01 | 0.0000 | 97.0 | 15.57% | 3107.0 | 6.81% | motif file (matrix) |
svg |
19 |
| Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer | 1e-12 | -2.922e+01 | 0.0000 | 63.0 | 10.11% | 1613.8 | 3.54% | motif file (matrix) |
svg |
20 |
| Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer | 1e-12 | -2.883e+01 | 0.0000 | 96.0 | 15.41% | 3170.3 | 6.95% | motif file (matrix) |
svg |
21 |
| Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer | 1e-12 | -2.806e+01 | 0.0000 | 64.0 | 10.27% | 1701.2 | 3.73% | motif file (matrix) |
svg |
22 |
| Tbet(T-box)/CD8-Tbet-ChIP-Seq(GSE33802)/Homer | 1e-11 | -2.691e+01 | 0.0000 | 71.0 | 11.40% | 2064.4 | 4.52% | motif file (matrix) |
svg |
23 |
| FOXA1(Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer | 1e-11 | -2.647e+01 | 0.0000 | 75.0 | 12.04% | 2271.4 | 4.98% | motif file (matrix) |
svg |
24 |
| FOXA1(Forkhead)/MCF7-FOXA1-ChIP-Seq(GSE26831)/Homer | 1e-11 | -2.556e+01 | 0.0000 | 65.0 | 10.43% | 1850.6 | 4.06% | motif file (matrix) |
svg |
25 |
| Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer | 1e-10 | -2.418e+01 | 0.0000 | 57.0 | 9.15% | 1551.6 | 3.40% | motif file (matrix) |
svg |
26 |
| Foxa3(Forkhead)/Liver-Foxa3-ChIP-Seq(GSE77670)/Homer | 1e-10 | -2.397e+01 | 0.0000 | 32.0 | 5.14% | 568.8 | 1.25% | motif file (matrix) |
svg |
27 |
| FOXM1(Forkhead)/MCF7-FOXM1-ChIP-Seq(GSE72977)/Homer | 1e-9 | -2.153e+01 | 0.0000 | 63.0 | 10.11% | 1947.3 | 4.27% | motif file (matrix) |
svg |
28 |
| FOXP1(Forkhead)/H9-FOXP1-ChIP-Seq(GSE31006)/Homer | 1e-9 | -2.112e+01 | 0.0000 | 35.0 | 5.62% | 750.1 | 1.64% | motif file (matrix) |
svg |
29 |
| Tbx5(T-box)/HL1-Tbx5.biotin-ChIP-Seq(GSE21529)/Homer | 1e-8 | -1.986e+01 | 0.0000 | 164.0 | 26.32% | 7718.6 | 16.92% | motif file (matrix) |
svg |
30 |
| Sox17(HMG)/Endoderm-Sox17-ChIP-Seq(GSE61475)/Homer | 1e-8 | -1.983e+01 | 0.0000 | 47.0 | 7.54% | 1291.3 | 2.83% | motif file (matrix) |
svg |
31 |
| Sox15(HMG)/CPA-Sox15-ChIP-Seq(GSE62909)/Homer | 1e-8 | -1.887e+01 | 0.0000 | 60.0 | 9.63% | 1942.2 | 4.26% | motif file (matrix) |
svg |
32 |
| FOXK1(Forkhead)/HEK293-FOXK1-ChIP-Seq(GSE51673)/Homer | 1e-7 | -1.755e+01 | 0.0000 | 60.0 | 9.63% | 2016.3 | 4.42% | motif file (matrix) |
svg |
33 |
| Foxo3(Forkhead)/U2OS-Foxo3-ChIP-Seq(E-MTAB-2701)/Homer | 1e-7 | -1.743e+01 | 0.0000 | 47.0 | 7.54% | 1398.0 | 3.06% | motif file (matrix) |
svg |
34 |
| Fox:Ebox(Forkhead,bHLH)/Panc1-Foxa2-ChIP-Seq(GSE47459)/Homer | 1e-7 | -1.727e+01 | 0.0000 | 55.0 | 8.83% | 1786.7 | 3.92% | motif file (matrix) |
svg |
35 |
| FoxL2(Forkhead)/Ovary-FoxL2-ChIP-Seq(GSE60858)/Homer | 1e-7 | -1.625e+01 | 0.0000 | 49.0 | 7.87% | 1551.4 | 3.40% | motif file (matrix) |
svg |
36 |
| CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer | 1e-6 | -1.591e+01 | 0.0000 | 13.0 | 2.09% | 141.6 | 0.31% | motif file (matrix) |
svg |
37 |
| Pax7(Paired,Homeobox),long/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer | 1e-6 | -1.580e+01 | 0.0000 | 9.0 | 1.44% | 57.2 | 0.13% | motif file (matrix) |
svg |
38 |
| FOXK2(Forkhead)/U2OS-FOXK2-ChIP-Seq(E-MTAB-2204)/Homer | 1e-6 | -1.542e+01 | 0.0000 | 40.0 | 6.42% | 1171.5 | 2.57% | motif file (matrix) |
svg |
39 |
| TEAD4(TEA)/Tropoblast-Tead4-ChIP-Seq(GSE37350)/Homer | 1e-6 | -1.442e+01 | 0.0000 | 52.0 | 8.35% | 1803.4 | 3.95% | motif file (matrix) |
svg |
40 |
| Sox9(HMG)/Limb-SOX9-ChIP-Seq(GSE73225)/Homer | 1e-6 | -1.385e+01 | 0.0000 | 50.0 | 8.03% | 1737.4 | 3.81% | motif file (matrix) |
svg |
41 |
| Foxf1(Forkhead)/Lung-Foxf1-ChIP-Seq(GSE77951)/Homer | 1e-5 | -1.372e+01 | 0.0000 | 49.0 | 7.87% | 1696.0 | 3.72% | motif file (matrix) |
svg |
42 |
| Oct4(POU,Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer | 1e-5 | -1.304e+01 | 0.0000 | 30.0 | 4.82% | 828.3 | 1.82% | motif file (matrix) |
svg |
43 |
| BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer | 1e-4 | -1.119e+01 | 0.0001 | 13.0 | 2.09% | 218.6 | 0.48% | motif file (matrix) |
svg |
44 |
| OCT4-SOX2-TCF-NANOG(POU,Homeobox,HMG)/mES-Oct4-ChIP-Seq(GSE11431)/Homer | 1e-4 | -1.084e+01 | 0.0002 | 15.0 | 2.41% | 295.8 | 0.65% | motif file (matrix) |
svg |
45 |
| Foxo1(Forkhead)/RAW-Foxo1-ChIP-Seq(Fan_et_al.)/Homer | 1e-4 | -1.059e+01 | 0.0002 | 88.0 | 14.13% | 4137.6 | 9.07% | motif file (matrix) |
svg |
46 |
| TEAD2(TEA)/Py2T-Tead2-ChIP-Seq(GSE55709)/Homer | 1e-4 | -9.911e+00 | 0.0004 | 32.0 | 5.14% | 1077.7 | 2.36% | motif file (matrix) |
svg |
47 |
| Brn1(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer | 1e-4 | -9.544e+00 | 0.0006 | 21.0 | 3.37% | 580.3 | 1.27% | motif file (matrix) |
svg |
48 |
| SCL(bHLH)/HPC7-Scl-ChIP-Seq(GSE13511)/Homer | 1e-4 | -9.441e+00 | 0.0006 | 221.0 | 35.47% | 12971.3 | 28.43% | motif file (matrix) |
svg |
49 |
| TEAD(TEA)/Fibroblast-PU.1-ChIP-Seq(Unpublished)/Homer | 1e-4 | -9.325e+00 | 0.0007 | 39.0 | 6.26% | 1472.1 | 3.23% | motif file (matrix) |
svg |
50 |
| Foxh1(Forkhead)/hESC-FOXH1-ChIP-Seq(GSE29422)/Homer | 1e-4 | -9.315e+00 | 0.0007 | 35.0 | 5.62% | 1266.0 | 2.77% | motif file (matrix) |
svg |
51 |
| HEB(bHLH)/mES-Heb-ChIP-Seq(GSE53233)/Homer | 1e-4 | -9.285e+00 | 0.0007 | 89.0 | 14.29% | 4354.6 | 9.54% | motif file (matrix) |
svg |
52 |
| EWS:FLI1-fusion(ETS)/SK_N_MC-EWS:FLI1-ChIP-Seq(SRA014231)/Homer | 1e-3 | -8.952e+00 | 0.0009 | 30.0 | 4.82% | 1036.0 | 2.27% | motif file (matrix) |
svg |
53 |
| GABPA(ETS)/Jurkat-GABPa-ChIP-Seq(GSE17954)/Homer | 1e-3 | -8.900e+00 | 0.0009 | 42.0 | 6.74% | 1664.9 | 3.65% | motif file (matrix) |
svg |
54 |
| TCFL2(HMG)/K562-TCF7L2-ChIP-Seq(GSE29196)/Homer | 1e-3 | -8.505e+00 | 0.0014 | 9.0 | 1.44% | 144.3 | 0.32% | motif file (matrix) |
svg |
55 |
| GATA3(Zf),DR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer | 1e-3 | -7.823e+00 | 0.0027 | 10.0 | 1.61% | 193.7 | 0.42% | motif file (matrix) |
svg |
56 |
| EBF1(EBF)/Near-E2A-ChIP-Seq(GSE21512)/Homer | 1e-3 | -7.453e+00 | 0.0038 | 51.0 | 8.19% | 2301.9 | 5.04% | motif file (matrix) |
svg |
57 |
| Ptf1a(bHLH)/Panc1-Ptf1a-ChIP-Seq(GSE47459)/Homer | 1e-3 | -7.309e+00 | 0.0043 | 117.0 | 18.78% | 6417.8 | 14.07% | motif file (matrix) |
svg |
58 |
| Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer | 1e-3 | -7.211e+00 | 0.0046 | 17.0 | 2.73% | 504.8 | 1.11% | motif file (matrix) |
svg |
59 |
| Lhx3(Homeobox)/Neuron-Lhx3-ChIP-Seq(GSE31456)/Homer | 1e-3 | -7.160e+00 | 0.0048 | 100.0 | 16.05% | 5347.1 | 11.72% | motif file (matrix) |
svg |
60 |
| Zfp281(Zf)/ES-Zfp281-ChIP-Seq(GSE81042)/Homer | 1e-3 | -7.130e+00 | 0.0049 | 12.0 | 1.93% | 290.6 | 0.64% | motif file (matrix) |
svg |
61 |
| Tcf4(HMG)/Hct116-Tcf4-ChIP-Seq(SRA012054)/Homer | 1e-3 | -6.940e+00 | 0.0058 | 25.0 | 4.01% | 910.4 | 2.00% | motif file (matrix) |
svg |
62 |
| Brachyury(T-box)/Mesoendoderm-Brachyury-ChIP-exo(GSE54963)/Homer | 1e-2 | -6.397e+00 | 0.0098 | 16.0 | 2.57% | 497.4 | 1.09% | motif file (matrix) |
svg |
63 |
| Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer | 1e-2 | -6.348e+00 | 0.0101 | 98.0 | 15.73% | 5356.1 | 11.74% | motif file (matrix) |
svg |
64 |
| X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer | 1e-2 | -6.105e+00 | 0.0127 | 8.0 | 1.28% | 165.7 | 0.36% | motif file (matrix) |
svg |
65 |
| E2A(bHLH)/proBcell-E2A-ChIP-Seq(GSE21978)/Homer | 1e-2 | -5.805e+00 | 0.0169 | 65.0 | 10.43% | 3350.1 | 7.34% | motif file (matrix) |
svg |
66 |
| Oct6(POU,Homeobox)/NPC-Pou3f1-ChIP-Seq(GSE35496)/Homer | 1e-2 | -5.650e+00 | 0.0194 | 21.0 | 3.37% | 791.3 | 1.73% | motif file (matrix) |
svg |
67 |
| ETV1(ETS)/GIST48-ETV1-ChIP-Seq(GSE22441)/Homer | 1e-2 | -5.534e+00 | 0.0215 | 56.0 | 8.99% | 2833.0 | 6.21% | motif file (matrix) |
svg |
68 |
| Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer | 1e-2 | -5.510e+00 | 0.0217 | 10.0 | 1.61% | 265.8 | 0.58% | motif file (matrix) |
svg |
69 |
| NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer | 1e-2 | -5.505e+00 | 0.0217 | 27.0 | 4.33% | 1126.7 | 2.47% | motif file (matrix) |
svg |
70 |
| Ascl1(bHLH)/NeuralTubes-Ascl1-ChIP-Seq(GSE55840)/Homer | 1e-2 | -5.477e+00 | 0.0217 | 68.0 | 10.91% | 3588.1 | 7.86% | motif file (matrix) |
svg |
71 |
| Elk1(ETS)/Hela-Elk1-ChIP-Seq(GSE31477)/Homer | 1e-2 | -5.172e+00 | 0.0291 | 22.0 | 3.53% | 880.5 | 1.93% | motif file (matrix) |
svg |
72 |
| Elk4(ETS)/Hela-Elk4-ChIP-Seq(GSE31477)/Homer | 1e-2 | -5.059e+00 | 0.0321 | 22.0 | 3.53% | 889.9 | 1.95% | motif file (matrix) |
svg |
73 |
| ETS(ETS)/Promoter/Homer | 1e-2 | -4.923e+00 | 0.0363 | 14.0 | 2.25% | 480.9 | 1.05% | motif file (matrix) |
svg |
74 |
| E2A(bHLH),near_PU.1/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer | 1e-2 | -4.922e+00 | 0.0363 | 57.0 | 9.15% | 2984.5 | 6.54% | motif file (matrix) |
svg |
75 |
| ETS1(ETS)/Jurkat-ETS1-ChIP-Seq(GSE17954)/Homer | 1e-2 | -4.880e+00 | 0.0369 | 44.0 | 7.06% | 2187.5 | 4.79% | motif file (matrix) |
svg |
76 |
| Tcf21(bHLH)/ArterySmoothMuscle-Tcf21-ChIP-Seq(GSE61369)/Homer | 1e-2 | -4.733e+00 | 0.0421 | 45.0 | 7.22% | 2268.5 | 4.97% | motif file (matrix) |
svg |
77 |
| Fli1(ETS)/CD8-FLI-ChIP-Seq(GSE20898)/Homer | 1e-2 | -4.732e+00 | 0.0421 | 44.0 | 7.06% | 2207.4 | 4.84% | motif file (matrix) |
svg |