Information for 6-GVMAGCCTKTSAY (Motif 8)

A T C G T A C G T G A C C G T A A C T G A T G C G A T C C G A T C A T G C G A T A T G C G C T A A G T C
Reverse Opposite:
T C A G C G A T A T C G C G T A G T A C G C T A C T A G A T C G G T A C A C G T A C T G A C G T T A G C
p-value:1e-12
log p-value:-2.884e+01
Information Content per bp:1.584
Number of Target Sequences with motif81.0
Percentage of Target Sequences with motif13.00%
Number of Background Sequences with motif2441.0
Percentage of Background Sequences with motif5.35%
Average Position of motif in Targets48.2 +/- 24.7bp
Average Position of motif in Background50.6 +/- 30.7bp
Strand Bias (log2 ratio + to - strand density)0.1
Multiplicity (# of sites on avg that occur together)1.10
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

POL010.1_DCE_S_III/Jaspar

Match Rank:1
Score:0.58
Offset:2
Orientation:forward strand
Alignment:GVMAGCCTKTSAY
--CAGCC------
 A T C G T A C G T G A C C G T A A C T G A T G C G A T C C G A T C A T G C G A T A T G C G C T A A G T C
A C G T A C G T T A G C C G T A A C T G A G T C A T G C A C G T A C G T A C G T A C G T A C G T A C G T

POL009.1_DCE_S_II/Jaspar

Match Rank:2
Score:0.55
Offset:0
Orientation:reverse strand
Alignment:GVMAGCCTKTSAY
CACAGN-------
 A T C G T A C G T G A C C G T A A C T G A T G C G A T C C G A T C A T G C G A T A T G C G C T A A G T C
T A G C C T G A T A G C G T C A A C T G A T G C A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:3
Score:0.55
Offset:1
Orientation:reverse strand
Alignment:GVMAGCCTKTSAY
-BCAGACWA----
 A T C G T A C G T G A C C G T A A C T G A T G C G A T C C G A T C A T G C G A T A T G C G C T A A G T C
A C G T A T G C A G T C C G T A C T A G G T C A A G T C C G T A T C G A A C G T A C G T A C G T A C G T

Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:4
Score:0.54
Offset:-1
Orientation:reverse strand
Alignment:-GVMAGCCTKTSAY
TGGCAGNCTGCCAG
 A C G T A T C G T A C G T G A C C G T A A C T G A T G C G A T C C G A T C A T G C G A T A T G C G C T A A G T C
C A G T A C T G A T C G T G A C G C T A A C T G T A G C G T A C C G A T A C T G T A G C G T A C G C T A T C A G

MEIS2/MA0774.1/Jaspar

Match Rank:5
Score:0.54
Offset:-2
Orientation:forward strand
Alignment:--GVMAGCCTKTSAY
TTGACAGC-------
 A C G T A C G T A T C G T A C G T G A C C G T A A C T G A T G C G A T C C G A T C A T G C G A T A T G C G C T A A G T C
C G A T C A G T A C T G C G T A G T A C T G C A T A C G T A G C A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Nr2e3/MA0164.1/Jaspar

Match Rank:6
Score:0.53
Offset:2
Orientation:reverse strand
Alignment:GVMAGCCTKTSAY
--AAGCTTG----
 A T C G T A C G T G A C C G T A A C T G A T G C G A T C C G A T C A T G C G A T A T G C G C T A A G T C
A C G T A C G T C G T A C G T A A C T G A T G C A C G T A C G T C T A G A C G T A C G T A C G T A C G T

PH0141.1_Pknox2/Jaspar

Match Rank:7
Score:0.53
Offset:-5
Orientation:reverse strand
Alignment:-----GVMAGCCTKTSAY
NNATTGACAGGTGCTT--
 A C G T A C G T A C G T A C G T A C G T A T C G T A C G T G A C C G T A A C T G A T G C G A T C C G A T C A T G C G A T A T G C G C T A A G T C
T C G A C A G T C G T A C A G T A G C T C T A G C G T A A G T C C T G A C A T G A T C G A G C T T A C G A G T C G A C T C G A T A C G T A C G T

Meis1(Homeobox)/MastCells-Meis1-ChIP-Seq(GSE48085)/Homer

Match Rank:8
Score:0.52
Offset:-3
Orientation:reverse strand
Alignment:---GVMAGCCTKTSAY
VBTGWCAGCB------
 A C G T A C G T A C G T A T C G T A C G T G A C C G T A A C T G A T G C G A T C C G A T C A T G C G A T A T G C G C T A A G T C
T C A G A T G C A C G T A C T G C G T A A G T C C G T A A T C G A T G C A G T C A C G T A C G T A C G T A C G T A C G T A C G T

MEIS3/MA0775.1/Jaspar

Match Rank:9
Score:0.51
Offset:-2
Orientation:forward strand
Alignment:--GVMAGCCTKTSAY
TTGACAGG-------
 A C G T A C G T A T C G T A C G T G A C C G T A A C T G A T G C G A T C C G A T C A T G C G A T A T G C G C T A A G T C
C G A T G C A T A T C G C T G A G A T C C T G A A C T G A T C G A C G T A C G T A C G T A C G T A C G T A C G T A C G T

PH0105.1_Meis3/Jaspar

Match Rank:10
Score:0.51
Offset:-5
Orientation:reverse strand
Alignment:-----GVMAGCCTKTSAY
GTATTGACAGGTNNTT--
 A C G T A C G T A C G T A C G T A C G T A T C G T A C G T G A C C G T A A C T G A T G C G A T C C G A T C A T G C G A T A T G C G C T A A G T C
C A T G A C G T C G T A C G A T G A C T A C T G C G T A A G T C C T G A C T A G T A C G G A C T T G C A G C T A G A C T G C A T A C G T A C G T