Information for 3-SCTWCCWGCTGWG (Motif 3)

T A C G G A T C G C A T C G T A A G T C G T A C C G A T A C T G A G T C C G A T A T C G C G A T A C T G
Reverse Opposite:
A G T C C G T A A T G C C G T A C T A G A G T C C G T A A C T G A C T G G C A T C G T A C T A G A T G C
p-value:1e-18
log p-value:-4.164e+01
Information Content per bp:1.711
Number of Target Sequences with motif35.0
Percentage of Target Sequences with motif5.62%
Number of Background Sequences with motif363.1
Percentage of Background Sequences with motif0.80%
Average Position of motif in Targets48.1 +/- 24.3bp
Average Position of motif in Background50.5 +/- 31.0bp
Strand Bias (log2 ratio + to - strand density)0.2
Multiplicity (# of sites on avg that occur together)1.03
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:1
Score:0.89
Offset:1
Orientation:reverse strand
Alignment:SCTWCCWGCTGWG
-CCCCCTGCTGTG
 T A C G G A T C G C A T C G T A A G T C G T A C C G A T A C T G A G T C C G A T A T C G C G A T A C T G
A C G T G A T C G A T C G A T C G T A C G T A C G C A T C T A G A G T C G C A T A C T G C G A T A C T G

Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer

Match Rank:2
Score:0.88
Offset:-1
Orientation:forward strand
Alignment:-SCTWCCWGCTGWG-
GGCCYCCTGCTGDGH
 A C G T T A C G G A T C G C A T C G T A A G T C G T A C C G A T A C T G A G T C C G A T A T C G C G A T A C T G A C G T
C A T G T A C G T A G C G A T C G A T C A T G C G T A C G A C T T C A G A T G C C G A T A T C G C A G T A C T G G T A C

PB0205.1_Zic1_2/Jaspar

Match Rank:3
Score:0.86
Offset:1
Orientation:reverse strand
Alignment:SCTWCCWGCTGWG---
-TNTCCTGCTGTGNNG
 T A C G G A T C G C A T C G T A A G T C G T A C C G A T A C T G A G T C C G A T A T C G C G A T A C T G A C G T A C G T A C G T
A C G T G C A T A G T C C A G T T G A C G T A C G A C T T C A G A G T C C G A T C T A G A G C T A C T G G C A T C A T G T C A G

PB0207.1_Zic3_2/Jaspar

Match Rank:4
Score:0.86
Offset:1
Orientation:reverse strand
Alignment:SCTWCCWGCTGWG---
-NNTCCTGCTGTGNNN
 T A C G G A T C G C A T C G T A A G T C G T A C C G A T A C T G A G T C C G A T A T C G C G A T A C T G A C G T A C G T A C G T
A C G T G C A T A T C G C A G T T G A C T G A C G A C T T C A G A G T C C G A T C T A G G A C T A C T G G A T C G C A T G T A C

PB0206.1_Zic2_2/Jaspar

Match Rank:5
Score:0.85
Offset:1
Orientation:reverse strand
Alignment:SCTWCCWGCTGWG---
-TCNCCTGCTGNGNNN
 T A C G G A T C G C A T C G T A A G T C G T A C C G A T A C T G A G T C C G A T A T C G C G A T A C T G A C G T A C G T A C G T
A C G T G C A T A G T C A C G T T G A C T G A C G A C T T C A G A G T C C G A T C T A G A G C T A C T G G A C T C A T G C T A G

Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer

Match Rank:6
Score:0.84
Offset:4
Orientation:forward strand
Alignment:SCTWCCWGCTGWG-
----CCTGCTGAGH
 T A C G G A T C G C A T C G T A A G T C G T A C C G A T A C T G A G T C C G A T A T C G C G A T A C T G A C G T
A C G T A C G T A C G T A C G T A G T C G T A C A G C T C T A G A G T C C G A T A C T G C G T A A C T G G T C A

Tcf21(bHLH)/ArterySmoothMuscle-Tcf21-ChIP-Seq(GSE61369)/Homer

Match Rank:7
Score:0.73
Offset:4
Orientation:reverse strand
Alignment:SCTWCCWGCTGWG-
----CCAGCTGTTN
 T A C G G A T C G C A T C G T A A G T C G T A C C G A T A C T G A G T C C G A T A T C G C G A T A C T G A C G T
A C G T A C G T A C G T A C G T T G A C G T A C C T G A A C T G T G A C G C A T C A T G A C G T A C G T G C T A

ZIC1/MA0696.1/Jaspar

Match Rank:8
Score:0.71
Offset:-1
Orientation:forward strand
Alignment:-SCTWCCWGCTGWG
GACCCCCCGCTGTG
 A C G T T A C G G A T C G C A T C G T A A G T C G T A C C G A T A C T G A G T C C G A T A T C G C G A T A C T G
A C T G T C G A G T A C G T A C G T A C A G T C G T A C G A T C T C A G A G T C A C G T T C A G G A C T A C T G

Ap4(bHLH)/AML-Tfap4-ChIP-Seq(GSE45738)/Homer

Match Rank:9
Score:0.71
Offset:2
Orientation:forward strand
Alignment:SCTWCCWGCTGWG
--NAHCAGCTGD-
 T A C G G A T C G C A T C G T A A G T C G T A C C G A T A C T G A G T C C G A T A T C G C G A T A C T G
A C G T A C G T G T C A T G C A G C T A A G T C C G T A A C T G T G A C G C A T T C A G C A G T A C G T

ZIC3/MA0697.1/Jaspar

Match Rank:10
Score:0.68
Offset:-1
Orientation:forward strand
Alignment:-SCTWCCWGCTGWG-
GACCCCCCGCTGCGC
 A C G T T A C G G A T C G C A T C G T A A G T C G T A C C G A T A C T G A G T C C G A T A T C G C G A T A C T G A C G T
A C T G T C G A G T A C G A T C G T A C A G T C A G T C A G T C T C A G A G T C A C G T C A T G G A T C C A T G G T A C