Information for 18-GCGCTGCTCTATAAAG (Motif 27)

A T C G A T G C T A C G T A G C C G A T A C T G A G T C A C G T A G T C A G C T C T G A A C G T C G T A C T G A C G T A A T C G
Reverse Opposite:
A T G C A C G T A G C T C G A T C G T A A G C T C T G A C T A G C G T A C T A G G T A C G C T A A C T G A T G C A T C G A T G C
p-value:1e-9
log p-value:-2.283e+01
Information Content per bp:1.732
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.80%
Number of Background Sequences with motif2.5
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets49.8 +/- 23.5bp
Average Position of motif in Background16.6 +/- 14.4bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.20
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

CDX4(Homeobox)/ZebrafishEmbryos-Cdx4.Myc-ChIP-Seq(GSE48254)/Homer

Match Rank:1
Score:0.58
Offset:6
Orientation:forward strand
Alignment:GCGCTGCTCTATAAAG--
------NGYCATAAAWCH
 A T C G A T G C T A C G T A G C C G A T A C T G A G T C A C G T A G T C A G C T C T G A A C G T C G T A C T G A C G T A A T C G A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T T A C G T C A G G A T C G T A C T C G A G A C T G C T A G C T A G C T A C G T A G A T C G T C A

POL012.1_TATA-Box/Jaspar

Match Rank:2
Score:0.57
Offset:8
Orientation:forward strand
Alignment:GCGCTGCTCTATAAAG-------
--------GTATAAAAGGCGGGG
 A T C G A T G C T A C G T A G C C G A T A C T G A G T C A C G T A G T C A G C T C T G A A C G T C G T A C T G A C G T A A T C G A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T T A C G A G C T C G T A G A C T C G T A C G T A C T G A C G T A T C A G T A C G T A G C T A C G T A C G A T C G T A C G

TBP/MA0108.2/Jaspar

Match Rank:3
Score:0.56
Offset:8
Orientation:forward strand
Alignment:GCGCTGCTCTATAAAG-------
--------GTATAAAAGGCGGGG
 A T C G A T G C T A C G T A G C C G A T A C T G A G T C A C G T A G T C A G C T C T G A A C G T C G T A C T G A C G T A A T C G A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T T A C G A G C T C G T A G A C T C G T A C G T A C T G A C G T A T C A G T A C G T A G C T A C G T A C G A T C G T A C G

CDX1/MA0878.1/Jaspar

Match Rank:4
Score:0.52
Offset:7
Orientation:forward strand
Alignment:GCGCTGCTCTATAAAG
-------GCAATAAAA
 A T C G A T G C T A C G T A G C C G A T A C T G A G T C A C G T A G T C A G C T C T G A A C G T C G T A C T G A C G T A A T C G
A C G T A C G T A C G T A C G T A C G T A C G T A C G T T C A G G A T C G T C A T C G A G C A T G C T A C G T A G C T A G T C A

Foxf1(Forkhead)/Lung-Foxf1-ChIP-Seq(GSE77951)/Homer

Match Rank:5
Score:0.52
Offset:6
Orientation:forward strand
Alignment:GCGCTGCTCTATAAAG--
------WWATRTAAACAN
 A T C G A T G C T A C G T A G C C G A T A C T G A G T C A C G T A G T C A G C T C T G A A C G T C G T A C T G A C G T A A T C G A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T G C A T G C A T C T G A A C G T C T G A A C G T C G T A C G T A C G T A A G T C G T C A G T C A

ZNF415(Zf)/HEK293-ZNF415.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:6
Score:0.52
Offset:4
Orientation:reverse strand
Alignment:GCGCTGCTCTATAAAG
----GGCTCYAKCAYC
 A T C G A T G C T A C G T A G C C G A T A C T G A G T C A C G T A G T C A G C T C T G A A C G T C G T A C T G A C G T A A T C G
A C G T A C G T A C G T A C G T C A T G A C T G A G T C A C G T A G T C G A T C C G T A A C T G T A G C C T G A A G C T T A G C

FoxL2(Forkhead)/Ovary-FoxL2-ChIP-Seq(GSE60858)/Homer

Match Rank:7
Score:0.52
Offset:7
Orientation:forward strand
Alignment:GCGCTGCTCTATAAAG---
-------WWTRTAAACAVG
 A T C G A T G C T A C G T A G C C G A T A C T G A G T C A C G T A G T C A G C T C T G A A C G T C G T A C T G A C G T A A T C G A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T C G T A G C T A C G A T C T A G A C G T G T C A C G T A C G T A A G T C C G T A T G C A T A C G

Unknown(Homeobox)/Limb-p300-ChIP-Seq/Homer

Match Rank:8
Score:0.52
Offset:6
Orientation:forward strand
Alignment:GCGCTGCTCTATAAAG
------NGCAATTAAA
 A T C G A T G C T A C G T A G C C G A T A C T G A G T C A C G T A G T C A G C T C T G A A C G T C G T A C T G A C G T A A T C G
A C G T A C G T A C G T A C G T A C G T A C G T T A C G A T C G G A T C G T C A C T G A G C A T C G A T G C T A T C G A G C T A

PH0078.1_Hoxd13/Jaspar

Match Rank:9
Score:0.51
Offset:4
Orientation:forward strand
Alignment:GCGCTGCTCTATAAAG----
----CTACCAATAAAATTCT
 A T C G A T G C T A C G T A G C C G A T A C T G A G T C A C G T A G T C A G C T C T G A A C G T C G T A C T G A C G T A A T C G A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T G T A C C G A T G C T A A G T C G A T C G C T A C G T A A G C T C G T A C G T A C G T A G C T A G A C T G A C T G T A C G A C T

HOXB13(Homeobox)/ProstateTumor-HOXB13-ChIP-Seq(GSE56288)/Homer

Match Rank:10
Score:0.51
Offset:6
Orientation:reverse strand
Alignment:GCGCTGCTCTATAAAG
------CCYMATAAAA
 A T C G A T G C T A C G T A G C C G A T A C T G A G T C A C G T A G T C A G C T C T G A A C G T C G T A C T G A C G T A A T C G
A C G T A C G T A C G T A C G T A C G T A C G T T G A C A T G C A G T C G T C A C T G A A C G T C G T A C G T A C G T A G C T A