Information for 16-CTTTGTCTTGKAAAAG (Motif 25)

A G T C C G A T C A G T A C G T T A C G A C G T A G T C A C G T C A G T A T C G A C G T C G T A C T G A C T G A C G T A A C T G
Reverse Opposite:
G T A C G C A T A G C T G A C T C G A T T G C A A T G C G T C A C G T A A C T G C G T A A T G C C G T A G C T A C G T A C T A G
p-value:1e-10
log p-value:-2.405e+01
Information Content per bp:1.706
Number of Target Sequences with motif8.0
Percentage of Target Sequences with motif1.28%
Number of Background Sequences with motif14.7
Percentage of Background Sequences with motif0.03%
Average Position of motif in Targets40.2 +/- 24.2bp
Average Position of motif in Background53.7 +/- 15.5bp
Strand Bias (log2 ratio + to - strand density)-1.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Sox3/MA0514.1/Jaspar

Match Rank:1
Score:0.69
Offset:-1
Orientation:forward strand
Alignment:-CTTTGTCTTGKAAAAG
CCTTTGTTTT-------
 A C G T A G T C C G A T C A G T A C G T T A C G A C G T A G T C A C G T C A G T A T C G A C G T C G T A C T G A C T G A C G T A A C T G
A T G C A G T C C G A T A C G T A C G T A T C G A C G T A G C T A G C T A G C T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Pou5f1::Sox2/MA0142.1/Jaspar

Match Rank:2
Score:0.66
Offset:0
Orientation:forward strand
Alignment:CTTTGTCTTGKAAAAG
CTTTGTTATGCAAAT-
 A G T C C G A T C A G T A C G T T A C G A C G T A G T C A C G T C A G T A T C G A C G T C G T A C T G A C T G A C G T A A C T G
A G T C G C A T A G C T C A G T T A C G C G A T G A C T G C T A C G A T A C T G A G T C C G T A C T G A C T G A C A G T A C G T

PB0166.1_Sox12_2/Jaspar

Match Rank:3
Score:0.66
Offset:-4
Orientation:reverse strand
Alignment:----CTTTGTCTTGKAAAAG
ANTCCTTTGTCTNNNN----
 A C G T A C G T A C G T A C G T A G T C C G A T C A G T A C G T T A C G A C G T A G T C A C G T C A G T A T C G A C G T C G T A C T G A C T G A C G T A A C T G
C G T A G C A T A C G T A G T C A T G C C G A T A G C T C G A T T C A G A C G T T A G C G A C T T C A G G C A T A C G T A C G T A C G T A C G T A C G T A C G T

SOX10/MA0442.1/Jaspar

Match Rank:4
Score:0.66
Offset:0
Orientation:forward strand
Alignment:CTTTGTCTTGKAAAAG
CTTTGT----------
 A G T C C G A T C A G T A C G T T A C G A C G T A G T C A C G T C A G T A T C G A C G T C G T A C T G A C T G A C G T A A C T G
A G T C C G A T A C G T A C G T A T C G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Sox6/MA0515.1/Jaspar

Match Rank:5
Score:0.65
Offset:-1
Orientation:forward strand
Alignment:-CTTTGTCTTGKAAAAG
CCATTGTTTT-------
 A C G T A G T C C G A T C A G T A C G T T A C G A C G T A G T C A C G T C A G T A T C G A C G T C G T A C T G A C T G A C G T A A C T G
A G T C A G T C C G T A A C G T A C G T A C T G A C G T A G C T G A C T A G C T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

OCT4-SOX2-TCF-NANOG(POU,Homeobox,HMG)/mES-Oct4-ChIP-Seq(GSE11431)/Homer

Match Rank:6
Score:0.64
Offset:0
Orientation:reverse strand
Alignment:CTTTGTCTTGKAAAAG
CATTGTTATGCAAAT-
 A G T C C G A T C A G T A C G T T A C G A C G T A G T C A C G T C A G T A T C G A C G T C G T A C T G A C T G A C G T A A C T G
G A T C G C T A G A C T C G A T A T C G C G A T G A C T C G T A C G A T C A T G A G T C C G T A C T G A C G T A C G A T A C G T

Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer

Match Rank:7
Score:0.63
Offset:-1
Orientation:forward strand
Alignment:-CTTTGTCTTGKAAAAG
CCWTTGTYYB-------
 A C G T A G T C C G A T C A G T A C G T T A C G A C G T A G T C A C G T C A G T A T C G A C G T C G T A C T G A C T G A C G T A A C T G
A T G C A G T C G C A T A G C T A C G T T C A G C G A T A G C T G A T C A T C G A C G T A C G T A C G T A C G T A C G T A C G T A C G T

PB0121.1_Foxj3_2/Jaspar

Match Rank:8
Score:0.61
Offset:-2
Orientation:reverse strand
Alignment:--CTTTGTCTTGKAAAAG
NNCTTTGTTTTGNTNNN-
 A C G T A C G T A G T C C G A T C A G T A C G T T A C G A C G T A G T C A C G T C A G T A T C G A C G T C G T A C T G A C T G A C G T A A C T G
G C A T A T G C G T A C C G A T G C A T C G A T C T A G C G A T C A G T C G A T A C G T C T A G C A T G G A C T T A C G G C A T A C G T A C G T

Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer

Match Rank:9
Score:0.61
Offset:-1
Orientation:forward strand
Alignment:-CTTTGTCTTGKAAAAG
CCWTTGTY---------
 A C G T A G T C C G A T C A G T A C G T T A C G A C G T A G T C A C G T C A G T A T C G A C G T C G T A C T G A C T G A C G T A A C T G
A T G C G A T C C G A T A C G T A C G T A C T G C A G T A G C T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Sox9(HMG)/Limb-SOX9-ChIP-Seq(GSE73225)/Homer

Match Rank:10
Score:0.60
Offset:-6
Orientation:forward strand
Alignment:------CTTTGTCTTGKAAAAG
AGGVNCCTTTGT----------
 A C G T A C G T A C G T A C G T A C G T A C G T A G T C C G A T C A G T A C G T T A C G A C G T A G T C A C G T C A G T A T C G A C G T C G T A C T G A C T G A C G T A A C T G
C G T A C T A G T C A G T C A G A G T C A T G C A G T C G C A T A G C T A C G T A T C G C G A T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T