Information for 13-AGGMATTTGGCTTAAG (Motif 20)

C G T A A T C G A C T G G T C A C T G A A G C T A C G T C G A T A C T G A T C G G T A C A G C T A C G T T C G A C G T A A C T G
Reverse Opposite:
G T A C A C G T A C G T C G T A C T G A A C T G A T G C G T A C C G T A C G T A C T G A A G C T A C G T T A G C A T G C C G A T
p-value:1e-11
log p-value:-2.621e+01
Information Content per bp:1.750
Number of Target Sequences with motif9.0
Percentage of Target Sequences with motif1.44%
Number of Background Sequences with motif17.3
Percentage of Background Sequences with motif0.04%
Average Position of motif in Targets48.1 +/- 20.5bp
Average Position of motif in Background46.1 +/- 28.0bp
Strand Bias (log2 ratio + to - strand density)-0.7
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NFIC/MA0161.1/Jaspar

Match Rank:1
Score:0.55
Offset:6
Orientation:forward strand
Alignment:AGGMATTTGGCTTAAG
------TTGGCA----
 C G T A A T C G A C T G G T C A C T G A A G C T A C G T C G A T A C T G A T C G G T A C A G C T A C G T T C G A C G T A A C T G
A C G T A C G T A C G T A C G T A C G T A C G T G A C T C A G T T C A G C T A G G T A C C G T A A C G T A C G T A C G T A C G T

SD0002.1_at_AC_acceptor/Jaspar

Match Rank:2
Score:0.55
Offset:2
Orientation:reverse strand
Alignment:AGGMATTTGGCTTAAG
--NNACTTGCCTT---
 C G T A A T C G A C T G G T C A C T G A A G C T A C G T C G A T A C T G A T C G G T A C A G C T A C G T T C G A C G T A A C T G
A C G T A C G T T C G A G A T C T G C A A G T C G A C T A G C T A C T G A G T C G A T C G C A T A C G T A C G T A C G T A C G T

NFIX/MA0671.1/Jaspar

Match Rank:3
Score:0.54
Offset:5
Orientation:reverse strand
Alignment:AGGMATTTGGCTTAAG
-----NTTGGCANN--
 C G T A A T C G A C T G G T C A C T G A A G C T A C G T C G A T A C T G A T C G G T A C A G C T A C G T T C G A C G T A A C T G
A C G T A C G T A C G T A C G T A C G T A T G C G A C T A C G T A C T G T A C G T G A C C G T A G T A C A T C G A C G T A C G T

PB0032.1_IRC900814_1/Jaspar

Match Rank:4
Score:0.54
Offset:1
Orientation:reverse strand
Alignment:AGGMATTTGGCTTAAG-
-GNNATTTGTCGTAANN
 C G T A A T C G A C T G G T C A C T G A A G C T A C G T C G A T A C T G A T C G G T A C A G C T A C G T T C G A C G T A A C T G A C G T
A C G T T C A G G A T C G C A T C G T A C G A T C G A T G A C T A C T G G A C T A G T C A C T G C A G T T C G A C T G A G C T A G C A T

PITX3/MA0714.1/Jaspar

Match Rank:5
Score:0.54
Offset:7
Orientation:reverse strand
Alignment:AGGMATTTGGCTTAAG
-------GGGATTANN
 C G T A A T C G A C T G G T C A C T G A A G C T A C G T C G A T A C T G A T C G G T A C A G C T A C G T T C G A C G T A A C T G
A C G T A C G T A C G T A C G T A C G T A C G T A C G T C T A G T C A G C A T G G T C A A G C T G A C T C G T A C T G A A T C G

Pitx1/MA0682.1/Jaspar

Match Rank:6
Score:0.53
Offset:7
Orientation:reverse strand
Alignment:AGGMATTTGGCTTAAG
-------GGGATTAA-
 C G T A A T C G A C T G G T C A C T G A A G C T A C G T C G A T A C T G A T C G G T A C A G C T A C G T T C G A C G T A A C T G
A C G T A C G T A C G T A C G T A C G T A C G T A C G T C A T G C T A G C T A G G T C A C G A T A G C T C G T A C T G A A C G T

Nr2e1/MA0676.1/Jaspar

Match Rank:7
Score:0.52
Offset:6
Orientation:reverse strand
Alignment:AGGMATTTGGCTTAAG
------TTGACTTTT-
 C G T A A T C G A C T G G T C A C T G A A G C T A C G T C G A T A C T G A T C G G T A C A G C T A C G T T C G A C G T A A C T G
A C G T A C G T A C G T A C G T A C G T A C G T C G A T A C G T T C A G C T G A G A T C G A C T G A C T G A C T C G A T A C G T

CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer

Match Rank:8
Score:0.51
Offset:8
Orientation:reverse strand
Alignment:AGGMATTTGGCTTAAG
--------GGATTAGC
 C G T A A T C G A C T G G T C A C T G A A G C T A C G T C G A T A C T G A T C G G T A C A G C T A C G T T C G A C G T A A C T G
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T T C A G T A C G T G C A C A G T G C A T C G T A C T A G T A G C

NFIA/MA0670.1/Jaspar

Match Rank:9
Score:0.51
Offset:4
Orientation:reverse strand
Alignment:AGGMATTTGGCTTAAG
----NNTTGGCANN--
 C G T A A T C G A C T G G T C A C T G A A G C T A C G T C G A T A C T G A T C G G T A C A G C T A C G T T C G A C G T A A C T G
A C G T A C G T A C G T A C G T G C T A A G T C A C G T A C G T A C T G A C T G A G T C C G T A G T A C A G T C A C G T A C G T

RHOXF1/MA0719.1/Jaspar

Match Rank:10
Score:0.51
Offset:7
Orientation:reverse strand
Alignment:AGGMATTTGGCTTAAG
-------NGGATTAN-
 C G T A A T C G A C T G G T C A C T G A A G C T A C G T C G A T A C T G A T C G G T A C A G C T A C G T T C G A C G T A A C T G
A C G T A C G T A C G T A C G T A C G T A C G T A C G T C A T G C T A G A C T G G T C A A C G T G A C T G C T A C G A T A C G T