Information for 12-TGTCTBCAAGTGGAGC (Motif 19)

A C G T A C T G A C G T G T A C A C G T A T G C G T A C G T C A C G T A A T C G A C G T C T A G C T A G C G T A A C T G G A T C
Reverse Opposite:
C T A G A G T C A C G T A G T C G A T C G T C A A T G C C G A T A C G T A C T G T A C G C G T A A C T G G T C A A G T C C G T A
p-value:1e-11
log p-value:-2.628e+01
Information Content per bp:1.792
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.80%
Number of Background Sequences with motif1.9
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets44.8 +/- 25.8bp
Average Position of motif in Background51.3 +/- 12.1bp
Strand Bias (log2 ratio + to - strand density)2.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0160.1_Rfxdc2_2/Jaspar

Match Rank:1
Score:0.57
Offset:-4
Orientation:reverse strand
Alignment:----TGTCTBCAAGTGGAGC
NTNNCGTATCCAAGTNN---
 A C G T A C G T A C G T A C G T A C G T A C T G A C G T G T A C A C G T A T G C G T A C G T C A C G T A A T C G A C G T C T A G C T A G C G T A A C T G G A T C
C G T A C G A T G C A T A T G C A T G C C T A G G A C T G T C A C G A T A G T C A G T C C T G A G T C A T A C G A G C T T G C A T A C G A C G T A C G T A C G T

Oct4:Sox17(POU,Homeobox,HMG)/F9-Sox17-ChIP-Seq(GSE44553)/Homer

Match Rank:2
Score:0.54
Offset:-4
Orientation:forward strand
Alignment:----TGTCTBCAAGTGGAGC
CCATTGTATGCAAAT-----
 A C G T A C G T A C G T A C G T A C G T A C T G A C G T G T A C A C G T A T G C G T A C G T C A C G T A A T C G A C G T C T A G C T A G C G T A A C T G G A T C
A G T C G A T C G C T A C G A T A C G T T A C G G C A T C T G A G A C T A C T G A G T C G C T A C T G A T C G A C A G T A C G T A C G T A C G T A C G T A C G T

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:3
Score:0.53
Offset:-1
Orientation:forward strand
Alignment:-TGTCTBCAAGTGGAGC
CTGTCTGG---------
 A C G T A C G T A C T G A C G T G T A C A C G T A T G C G T A C G T C A C G T A A T C G A C G T C T A G C T A G C G T A A C T G G A T C
A T G C G A C T A C T G C A G T G A T C A C G T T A C G T A C G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:4
Score:0.53
Offset:-3
Orientation:forward strand
Alignment:---TGTCTBCAAGTGGAGC
VBSYGTCTGG---------
 A C G T A C G T A C G T A C G T A C T G A C G T G T A C A C G T A T G C G T A C G T C A C G T A A T C G A C G T C T A G C T A G C G T A A C T G G A T C
T A C G A T C G T A G C G A T C A C T G A C G T A G T C A C G T C T A G A T C G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:5
Score:0.52
Offset:-1
Orientation:forward strand
Alignment:-TGTCTBCAAGTGGAGC
TWGTCTGV---------
 A C G T A C G T A C T G A C G T G T A C A C G T A T G C G T A C G T C A C G T A A T C G A C G T C T A G C T A G C G T A A C T G G A T C
A G C T G C A T A C T G A C G T A G T C A C G T C T A G T A C G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

PB0158.1_Rfx3_2/Jaspar

Match Rank:6
Score:0.52
Offset:-6
Orientation:reverse strand
Alignment:------TGTCTBCAAGTGGAGC-
NNTNGNNGTAACCAAGNNNNAGN
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C T G A C G T G T A C A C G T A T G C G T A C G T C A C G T A A T C G A C G T C T A G C T A G C G T A A C T G G A T C A C G T
T A G C G C A T A G C T A G C T A C T G A G C T A C T G C A T G G A C T G T C A G C T A T A G C A G T C C G T A C G T A T A C G A T C G T A C G C G A T T A G C T G C A C T A G A C G T

PB0060.1_Smad3_1/Jaspar

Match Rank:7
Score:0.52
Offset:-5
Orientation:reverse strand
Alignment:-----TGTCTBCAAGTGGAGC
NNTNNTGTCTGGNNTNG----
 A C G T A C G T A C G T A C G T A C G T A C G T A C T G A C G T G T A C A C G T A T G C G T A C G T C A C G T A A T C G A C G T C T A G C T A G C G T A A C T G G A T C
C A G T A T C G C G A T T C A G T G C A G A C T A C T G C A G T A G T C A C G T T C A G T C A G G C T A G C A T C G A T G A C T C A T G A C G T A C G T A C G T A C G T

DMRT3/MA0610.1/Jaspar

Match Rank:8
Score:0.51
Offset:-2
Orientation:forward strand
Alignment:--TGTCTBCAAGTGGAGC
AATGTATCAAT-------
 A C G T A C G T A C G T A C T G A C G T G T A C A C G T A T G C G T A C G T C A C G T A A T C G A C G T C T A G C T A G C G T A A C T G G A T C
G T C A C G T A C G A T A C T G A C G T C G T A C G A T A G T C G T C A C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

PB0111.1_Bhlhb2_2/Jaspar

Match Rank:9
Score:0.51
Offset:-2
Orientation:forward strand
Alignment:--TGTCTBCAAGTGGAGC-----
TGTCATTACACGTGGAAGGCGGT
 A C G T A C G T A C G T A C T G A C G T G T A C A C G T A T G C G T A C G T C A C G T A A T C G A C G T C T A G C T A G C G T A A C T G G A T C A C G T A C G T A C G T A C G T A C G T
A G C T C T A G G A C T A T G C C T A G G A C T C A G T T G C A G T A C C T G A A G T C T C A G G A C T A C T G A C T G G T C A C T G A C T A G A T C G G T A C C T A G C T A G G C A T

ZNF354C/MA0130.1/Jaspar

Match Rank:10
Score:0.50
Offset:9
Orientation:reverse strand
Alignment:TGTCTBCAAGTGGAGC
---------GTGGAT-
 A C G T A C T G A C G T G T A C A C G T A T G C G T A C G T C A C G T A A T C G A C G T C T A G C T A G C G T A A C T G G A T C
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A T C G A C G T A C T G A C T G C G T A A C G T A C G T