Information for 9-RAGTAAYYSTGKCWGC (Motif 16)

T C A G C G T A A C T G A C G T C G T A C G T A A G T C A G C T T A G C A C G T C T A G A C G T A G T C C G A T A C T G A G T C
Reverse Opposite:
A C T G A G T C C G T A C T A G G T C A A G T C C G T A A T C G C T G A C T A G A C G T A C G T C G T A A G T C A C G T A G C T
p-value:1e-11
log p-value:-2.628e+01
Information Content per bp:1.838
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.80%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets47.2 +/- 13.9bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)-0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

RFX4/MA0799.1/Jaspar

Match Rank:1
Score:0.56
Offset:1
Orientation:forward strand
Alignment:RAGTAAYYSTGKCWGC-
-CGTTGCCATGGCAACG
 T C A G C G T A A C T G A C G T C G T A C G T A A G T C A G C T T A G C A C G T C T A G A C G T A G T C C G A T A C T G A G T C A C G T
A C G T A T G C C T A G G C A T G C A T C T A G A G T C A G T C C G T A G C A T T C A G T C A G G A T C C G T A T C G A G A T C T A C G

PB0159.1_Rfx4_2/Jaspar

Match Rank:2
Score:0.55
Offset:-1
Orientation:reverse strand
Alignment:-RAGTAAYYSTGKCWGC
NNNGTAACTANGNNA--
 A C G T T C A G C G T A A C T G A C G T C G T A C G T A A G T C A G C T T A G C A C G T C T A G A C G T A G T C C G A T A C T G A G T C
A C G T A T G C A T C G A C T G G A C T G T C A C G T A G T A C A G C T G C T A C A T G A T C G T A C G C A G T C G T A A C G T A C G T

PAX5(Paired,Homeobox),condensed/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer

Match Rank:3
Score:0.53
Offset:2
Orientation:forward strand
Alignment:RAGTAAYYSTGKCWGC
--GTCACGCTCNCTGA
 T C A G C G T A A C T G A C G T C G T A C G T A A G T C A G C T T A G C A C G T C T A G A C G T A G T C C G A T A C T G A G T C
A C G T A C G T A C T G G A C T A G T C C T G A G A T C T C A G A T G C G A C T A G T C A T G C T A G C A G C T A T C G T G C A

MafA(bZIP)/Islet-MafA-ChIP-Seq(GSE30298)/Homer

Match Rank:4
Score:0.52
Offset:7
Orientation:reverse strand
Alignment:RAGTAAYYSTGKCWGC-
-------TGAGTCAGCA
 T C A G C G T A A C T G A C G T C G T A C G T A A G T C A G C T T A G C A C G T C T A G A C G T A G T C C G A T A C T G A G T C A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T G A C T T A C G C G T A T A C G G A C T G T A C G C T A C T A G A G T C C T G A

Meis1(Homeobox)/MastCells-Meis1-ChIP-Seq(GSE48085)/Homer

Match Rank:5
Score:0.52
Offset:7
Orientation:reverse strand
Alignment:RAGTAAYYSTGKCWGC-
-------VBTGWCAGCB
 T C A G C G T A A C T G A C G T C G T A C G T A A G T C A G C T T A G C A C G T C T A G A C G T A G T C C G A T A C T G A G T C A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T T C A G A T G C A C G T A C T G C G T A A G T C C G T A A T C G A T G C A G T C

Tbx20(T-box)/Heart-Tbx20-ChIP-Seq(GSE29636)/Homer

Match Rank:6
Score:0.51
Offset:7
Orientation:reverse strand
Alignment:RAGTAAYYSTGKCWGC---
-------SCTGTCARCACC
 T C A G C G T A A C T G A C G T C G T A C G T A A G T C A G C T T A G C A C G T C T A G A C G T A G T C C G A T A C T G A G T C A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T T A G C G A T C C G A T C A T G G C A T A G T C G T C A C T G A A G T C C T G A T A G C A G T C

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:7
Score:0.51
Offset:8
Orientation:forward strand
Alignment:RAGTAAYYSTGKCWGC
--------CTGTCTGG
 T C A G C G T A A C T G A C G T C G T A C G T A A G T C A G C T T A G C A C G T C T A G A C G T A G T C C G A T A C T G A G T C
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A T G C G A C T A C T G C A G T G A T C A C G T T A C G T A C G

PH0169.1_Tgif1/Jaspar

Match Rank:8
Score:0.51
Offset:4
Orientation:forward strand
Alignment:RAGTAAYYSTGKCWGC-----
----GATATTGACAGCTGCGT
 T C A G C G T A A C T G A C G T C G T A C G T A A G T C A G C T T A G C A C G T C T A G A C G T A G T C C G A T A C T G A G T C A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T C A G T C T G A A C G T C G T A C G A T C G A T A C T G C G T A A G T C C T G A C T A G A T G C A C G T T A C G T A G C A C T G C G A T

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:9
Score:0.50
Offset:6
Orientation:forward strand
Alignment:RAGTAAYYSTGKCWGC
------VBSYGTCTGG
 T C A G C G T A A C T G A C G T C G T A C G T A A G T C A G C T T A G C A C G T C T A G A C G T A G T C C G A T A C T G A G T C
A C G T A C G T A C G T A C G T A C G T A C G T T A C G A T C G T A G C G A T C A C T G A C G T A G T C A C G T C T A G A T C G

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:10
Score:0.50
Offset:8
Orientation:forward strand
Alignment:RAGTAAYYSTGKCWGC
--------TWGTCTGV
 T C A G C G T A A C T G A C G T C G T A C G T A A G T C A G C T T A G C A C G T C T A G A C G T A G T C C G A T A C T G A G T C
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G C T G C A T A C T G A C G T A G T C A C G T C T A G T A C G