Information for 4-GGCCAYTGTTCTCTTG (Motif 11)

C A T G A C T G G A T C A G T C C G T A A G C T A C G T A C T G C G A T A C G T A T G C A G C T A T G C A G C T A G C T A T C G
Reverse Opposite:
T A G C C T G A C T G A T A C G C T G A A T C G T G C A C G T A T A G C C G T A C T G A C G A T A C T G C A T G A G T C G A T C
p-value:1e-12
log p-value:-2.792e+01
Information Content per bp:1.715
Number of Target Sequences with motif9.0
Percentage of Target Sequences with motif1.44%
Number of Background Sequences with motif14.5
Percentage of Background Sequences with motif0.03%
Average Position of motif in Targets42.4 +/- 28.5bp
Average Position of motif in Background48.0 +/- 15.2bp
Strand Bias (log2 ratio + to - strand density)-0.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer

Match Rank:1
Score:0.69
Offset:1
Orientation:forward strand
Alignment:GGCCAYTGTTCTCTTG
-NCCATTGTTC-----
 C A T G A C T G G A T C A G T C C G T A A G C T A C G T A C T G C G A T A C G T A T G C A G C T A T G C A G C T A G C T A T C G
A C G T A T G C A G T C G A T C C G T A A C G T A C G T A C T G A C G T A G C T G A T C A C G T A C G T A C G T A C G T A C G T

Sox6/MA0515.1/Jaspar

Match Rank:2
Score:0.68
Offset:2
Orientation:forward strand
Alignment:GGCCAYTGTTCTCTTG
--CCATTGTTTT----
 C A T G A C T G G A T C A G T C C G T A A G C T A C G T A C T G C G A T A C G T A T G C A G C T A T G C A G C T A G C T A T C G
A C G T A C G T A G T C A G T C C G T A A C G T A C G T A C T G A C G T A G C T G A C T A G C T A C G T A C G T A C G T A C G T

Sox17(HMG)/Endoderm-Sox17-ChIP-Seq(GSE61475)/Homer

Match Rank:3
Score:0.68
Offset:2
Orientation:forward strand
Alignment:GGCCAYTGTTCTCTTG
--CCATTGTTYB----
 C A T G A C T G G A T C A G T C C G T A A G C T A C G T A C T G C G A T A C G T A T G C A G C T A T G C A G C T A G C T A T C G
A C G T A C G T A T G C G A T C C G T A A G C T C A G T A T C G G C A T A G C T G A C T A C T G A C G T A C G T A C G T A C G T

Sox15(HMG)/CPA-Sox15-ChIP-Seq(GSE62909)/Homer

Match Rank:4
Score:0.67
Offset:1
Orientation:reverse strand
Alignment:GGCCAYTGTTCTCTTG
-NCCATTGTTY-----
 C A T G A C T G G A T C A G T C C G T A A G C T A C G T A C T G C G A T A C G T A T G C A G C T A T G C A G C T A G C T A T C G
A C G T C T A G A G T C G A T C G C T A C G A T A C G T A T C G A C G T A G C T G A C T A C G T A C G T A C G T A C G T A C G T

Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer

Match Rank:5
Score:0.66
Offset:2
Orientation:forward strand
Alignment:GGCCAYTGTTCTCTTG
--CCWTTGTYYB----
 C A T G A C T G G A T C A G T C C G T A A G C T A C G T A C T G C G A T A C G T A T G C A G C T A T G C A G C T A G C T A T C G
A C G T A C G T A T G C A G T C G C A T A G C T A C G T T C A G C G A T A G C T G A T C A T C G A C G T A C G T A C G T A C G T

Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer

Match Rank:6
Score:0.66
Offset:2
Orientation:forward strand
Alignment:GGCCAYTGTTCTCTTG
--YCTTTGTTCC----
 C A T G A C T G G A T C A G T C C G T A A G C T A C G T A C T G C G A T A C G T A T G C A G C T A T G C A G C T A G C T A T C G
A C G T A C G T A G T C A G T C C G A T A C G T A C G T A C T G A C G T A G C T A G T C A G T C A C G T A C G T A C G T A C G T

Sox2/MA0143.3/Jaspar

Match Rank:7
Score:0.65
Offset:2
Orientation:forward strand
Alignment:GGCCAYTGTTCTCTTG
--CCTTTGTT------
 C A T G A C T G G A T C A G T C C G T A A G C T A C G T A C T G C G A T A C G T A T G C A G C T A T G C A G C T A G C T A T C G
A C G T A C G T A G T C A G T C C G A T A C G T A C G T A C T G A C G T A G C T A C G T A C G T A C G T A C G T A C G T A C G T

PB0070.1_Sox30_1/Jaspar

Match Rank:8
Score:0.63
Offset:-2
Orientation:reverse strand
Alignment:--GGCCAYTGTTCTCTTG
ANNTCCATTGTTCNNN--
 A C G T A C G T C A T G A C T G G A T C A G T C C G T A A G C T A C G T A C T G C G A T A C G T A T G C A G C T A T G C A G C T A G C T A T C G
C T G A C T G A C A G T C G A T A G T C G T A C G C T A A G C T C A G T T C A G C G A T A G C T T A G C G C T A C G A T G A C T A C G T A C G T

Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer

Match Rank:9
Score:0.63
Offset:2
Orientation:forward strand
Alignment:GGCCAYTGTTCTCTTG
--CCATTGTTNY----
 C A T G A C T G G A T C A G T C C G T A A G C T A C G T A C T G C G A T A C G T A T G C A G C T A T G C A G C T A G C T A T C G
A C G T A C G T A T G C G T A C C G T A A G C T G C A T T A C G A G C T A G C T A G T C A G C T A C G T A C G T A C G T A C G T

SOX9/MA0077.1/Jaspar

Match Rank:10
Score:0.63
Offset:2
Orientation:forward strand
Alignment:GGCCAYTGTTCTCTTG
--CCATTGTTC-----
 C A T G A C T G G A T C A G T C C G T A A G C T A C G T A C T G C G A T A C G T A T G C A G C T A T G C A G C T A G C T A T C G
A C G T A C G T A G T C G A T C G C T A C A G T C G A T T A C G C G A T G C A T G A T C A C G T A C G T A C G T A C G T A C G T