Information for 1-NDARRRGATTARNDNN (Motif 1)

C G A T C T A G T C G A C T G A T C A G C T A G A C T G G T C A A C G T G C A T C G T A C T G A T A G C C A G T A T G C G T C A
Reverse Opposite:
C A G T T A C G G T C A A T C G G A C T C G A T C G T A C G T A A C G T A G T C G A T C A G C T G A C T A G C T G A T C G C T A
p-value:1e-172
log p-value:-3.961e+02
Information Content per bp:1.490
Number of Target Sequences with motif373.0
Percentage of Target Sequences with motif59.87%
Number of Background Sequences with motif5647.8
Percentage of Background Sequences with motif12.38%
Average Position of motif in Targets52.5 +/- 20.7bp
Average Position of motif in Background50.0 +/- 34.4bp
Strand Bias (log2 ratio + to - strand density)-0.3
Multiplicity (# of sites on avg that occur together)1.23
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Otx2(Homeobox)/EpiLC-Otx2-ChIP-Seq(GSE56098)/Homer

Match Rank:1
Score:0.92
Offset:3
Orientation:reverse strand
Alignment:NDARRRGATTARNDNN
---VRGGATTARN---
 C G A T C T A G T C G A C T G A T C A G C T A G A C T G G T C A A C G T G C A T C G T A C T G A T A G C C A G T A T G C G T C A
A C G T A C G T A C G T T C G A C T A G C T A G C T A G G T C A A C G T C G A T C G T A C T G A T A G C A C G T A C G T A C G T

CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer

Match Rank:2
Score:0.92
Offset:5
Orientation:reverse strand
Alignment:NDARRRGATTARNDNN
-----GGATTAGC---
 C G A T C T A G T C G A C T G A T C A G C T A G A C T G G T C A A C G T G C A T C G T A C T G A T A G C C A G T A T G C G T C A
A C G T A C G T A C G T A C G T A C G T T C A G T A C G T G C A C A G T G C A T C G T A C T A G T A G C A C G T A C G T A C G T

GSC(Homeobox)/FrogEmbryos-GSC-ChIP-Seq(DRA000576)/Homer

Match Rank:3
Score:0.91
Offset:4
Orientation:forward strand
Alignment:NDARRRGATTARNDNN
----RGGATTAR----
 C G A T C T A G T C G A C T G A T C A G C T A G A C T G G T C A A C G T G C A T C G T A C T G A T A G C C A G T A T G C G T C A
A C G T A C G T A C G T A C G T T C A G C T A G C T A G T G C A C G A T C G A T C G T A C T A G A C G T A C G T A C G T A C G T

OTX2/MA0712.1/Jaspar

Match Rank:4
Score:0.91
Offset:4
Orientation:reverse strand
Alignment:NDARRRGATTARNDNN
----NGGATTAA----
 C G A T C T A G T C G A C T G A T C A G C T A G A C T G G T C A A C G T G C A T C G T A C T G A T A G C C A G T A T G C G T C A
A C G T A C G T A C G T A C G T T G C A T C A G C T A G G T C A A C G T G C A T C G T A C T G A A C G T A C G T A C G T A C G T

PITX3/MA0714.1/Jaspar

Match Rank:5
Score:0.91
Offset:4
Orientation:reverse strand
Alignment:NDARRRGATTARNDNN
----GGGATTANN---
 C G A T C T A G T C G A C T G A T C A G C T A G A C T G G T C A A C G T G C A T C G T A C T G A T A G C C A G T A T G C G T C A
A C G T A C G T A C G T A C G T C T A G T C A G C A T G G T C A A G C T G A C T C G T A C T G A A T C G A C G T A C G T A C G T

Pitx1/MA0682.1/Jaspar

Match Rank:6
Score:0.91
Offset:4
Orientation:reverse strand
Alignment:NDARRRGATTARNDNN
----GGGATTAA----
 C G A T C T A G T C G A C T G A T C A G C T A G A C T G G T C A A C G T G C A T C G T A C T G A T A G C C A G T A T G C G T C A
A C G T A C G T A C G T A C G T C A T G C T A G C T A G G T C A C G A T A G C T C G T A C T G A A C G T A C G T A C G T A C G T

Crx/MA0467.1/Jaspar

Match Rank:7
Score:0.90
Offset:1
Orientation:forward strand
Alignment:NDARRRGATTARNDNN
-AAGAGGATTAG----
 C G A T C T A G T C G A C T G A T C A G C T A G A C T G G T C A A C G T G C A T C G T A C T G A T A G C C A G T A T G C G T C A
A C G T T C G A C T G A C T A G T C G A C T A G A C T G G T C A A C G T A G C T C G T A C T A G A C G T A C G T A C G T A C G T

GSC2/MA0891.1/Jaspar

Match Rank:8
Score:0.89
Offset:3
Orientation:reverse strand
Alignment:NDARRRGATTARNDNN
---GNGGATTAGN---
 C G A T C T A G T C G A C T G A T C A G C T A G A C T G G T C A A C G T G C A T C G T A C T G A T A G C C A G T A T G C G T C A
A C G T A C G T A C G T C T A G T A G C T C A G C A T G T G C A C G A T C G A T C G T A C T A G A C T G A C G T A C G T A C G T

OTX1/MA0711.1/Jaspar

Match Rank:9
Score:0.89
Offset:4
Orientation:reverse strand
Alignment:NDARRRGATTARNDNN
----CGGATTAN----
 C G A T C T A G T C G A C T G A T C A G C T A G A C T G G T C A A C G T G C A T C G T A C T G A T A G C C A G T A T G C G T C A
A C G T A C G T A C G T A C G T T A G C T A C G A T C G G T C A A C G T G C A T C G T A C T G A A C G T A C G T A C G T A C G T

RHOXF1/MA0719.1/Jaspar

Match Rank:10
Score:0.89
Offset:4
Orientation:reverse strand
Alignment:NDARRRGATTARNDNN
----NGGATTAN----
 C G A T C T A G T C G A C T G A T C A G C T A G A C T G G T C A A C G T G C A T C G T A C T G A T A G C C A G T A T G C G T C A
A C G T A C G T A C G T A C G T C A T G C T A G A C T G G T C A A C G T G A C T G C T A C G A T A C G T A C G T A C G T A C G T