Information for 5-GGAMATCACCAGC (Motif 8)

A C T G A T C G C G T A G T A C C G T A A C G T A G T C C G T A A G T C A G T C C G T A A T C G A G T C
Reverse Opposite:
A C T G A T G C A C G T A C T G A C T G C G A T A C T G G T C A A C G T A C G T A C G T A T G C A G T C
p-value:1e-8
log p-value:-2.047e+01
Information Content per bp:1.877
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif0.88%
Number of Background Sequences with motif11.4
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets46.4 +/- 25.8bp
Average Position of motif in Background55.3 +/- 24.7bp
Strand Bias (log2 ratio + to - strand density)1.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

MF0003.1_REL_class/Jaspar

Match Rank:1
Score:0.64
Offset:0
Orientation:reverse strand
Alignment:GGAMATCACCAGC
GGAAATCCCC---
 A C T G A T C G C G T A G T A C C G T A A C G T A G T C C G T A A G T C A G T C C G T A A T C G A G T C
C A T G C T A G C T G A T C G A G C T A C G A T G A T C G T A C T G A C T A G C A C G T A C G T A C G T

NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer

Match Rank:2
Score:0.63
Offset:-1
Orientation:reverse strand
Alignment:-GGAMATCACCAGC
GGGAAATCCCCN--
 A C G T A C T G A T C G C G T A G T A C C G T A A C G T A G T C C G T A A G T C A G T C C G T A A T C G A G T C
C A T G C T A G C T A G C T G A G C T A C G T A A G C T G A T C G T A C G T A C G T A C G C A T A C G T A C G T

NFkB-p65-Rel(RHD)/ThioMac-LPS-Expression(GSE23622)/Homer

Match Rank:3
Score:0.62
Offset:0
Orientation:forward strand
Alignment:GGAMATCACCAGC
GGAAATTCCC---
 A C T G A T C G C G T A G T A C C G T A A C G T A G T C C G T A A G T C A G T C C G T A A T C G A G T C
A C T G C A T G G C T A T C G A G C T A A G C T A G C T G T A C A G T C T G A C A C G T A C G T A C G T

RELA/MA0107.1/Jaspar

Match Rank:4
Score:0.61
Offset:0
Orientation:reverse strand
Alignment:GGAMATCACCAGC
GGAAATTCCC---
 A C T G A T C G C G T A G T A C C G T A A C G T A G T C C G T A A G T C A G T C C G T A A T C G A G T C
A C T G A C T G C T G A C G T A C G T A A G C T A G C T A G T C G T A C T A G C A C G T A C G T A C G T

REL/MA0101.1/Jaspar

Match Rank:5
Score:0.60
Offset:0
Orientation:reverse strand
Alignment:GGAMATCACCAGC
GGAAANCCCC---
 A C T G A T C G C G T A G T A C C G T A A C G T A G T C C G T A A G T C A G T C C G T A A T C G A G T C
A C T G C T A G C G T A C G T A C G T A A C G T G A T C G A T C T A G C T A G C A C G T A C G T A C G T

Slug(Zf)/Mesoderm-Snai2-ChIP-Seq(GSE61475)/Homer

Match Rank:6
Score:0.54
Offset:3
Orientation:forward strand
Alignment:GGAMATCACCAGC--
---SNGCACCTGCHS
 A C T G A T C G C G T A G T A C C G T A A C G T A G T C C G T A A G T C A G T C C G T A A T C G A G T C A C G T A C G T
A C G T A C G T A C G T T A C G C T A G T A C G A G T C C G T A A G T C A G T C A C G T A C T G A G T C G A T C T A G C

Gfi1/MA0038.1/Jaspar

Match Rank:7
Score:0.54
Offset:1
Orientation:forward strand
Alignment:GGAMATCACCAGC
-CAAATCACTG--
 A C T G A T C G C G T A G T A C C G T A A C G T A G T C C G T A A G T C A G T C C G T A A T C G A G T C
A C G T A G T C T G C A C G T A C G T A C A G T G T A C G C T A T A G C G C A T T A C G A C G T A C G T

PRDM9(Zf)/Testis-DMC1-ChIP-Seq(GSE35498)/Homer

Match Rank:8
Score:0.54
Offset:-1
Orientation:forward strand
Alignment:-GGAMATCACCAGC-
ADGGYAGYAGCATCT
 A C G T A C T G A T C G C G T A G T A C C G T A A C G T A G T C C G T A A G T C A G T C C G T A A T C G A G T C A C G T
C T G A C G A T C T A G T C A G G A T C C T G A T C A G G A T C C T G A A C T G A G T C G C T A A C G T A G T C G C A T

NFkB-p50,p52(RHD)/Monocyte-p50-ChIP-Chip(Schreiber_et_al.)/Homer

Match Rank:9
Score:0.54
Offset:-2
Orientation:forward strand
Alignment:--GGAMATCACCAGC
GGGGGAATCCCC---
 A C G T A C G T A C T G A T C G C G T A G T A C C G T A A C G T A G T C C G T A A G T C A G T C C G T A A T C G A G T C
T C A G C T A G C T A G C T A G T C A G T C G A C T G A C G A T A G T C G A T C A G T C T G A C A C G T A C G T A C G T

RBPJ:Ebox(?,bHLH)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer

Match Rank:10
Score:0.53
Offset:-2
Orientation:forward strand
Alignment:--GGAMATCACCAGC--
GGGRAARRGRMCAGMTG
 A C G T A C G T A C T G A T C G C G T A G T A C C G T A A C G T A G T C C G T A A G T C A G T C C G T A A T C G A G T C A C G T A C G T
C A T G A C T G C T A G T C G A T C G A T C G A T C G A T C A G T C A G T C A G T G A C T G A C C G T A A C T G T G C A C G A T A C T G