Information for 9-YGAGCWGTCCGGR (Motif 11)

A G T C A C T G C G T A A C T G A G T C C G A T A C T G A C G T A T G C G T A C A C T G A C T G C T G A
Reverse Opposite:
A G C T A G T C A G T C A C T G A T C G C G T A A G T C G C A T A C T G A G T C A C G T A G T C C T A G
p-value:1e-8
log p-value:-1.870e+01
Information Content per bp:1.892
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.75%
Number of Background Sequences with motif8.6
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets41.9 +/- 28.7bp
Average Position of motif in Background40.1 +/- 19.4bp
Strand Bias (log2 ratio + to - strand density)-0.4
Multiplicity (# of sites on avg that occur together)1.17
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:1
Score:0.57
Offset:4
Orientation:forward strand
Alignment:YGAGCWGTCCGGR
----CTGTCTGG-
 A G T C A C T G C G T A A C T G A G T C C G A T A C T G A C G T A T G C G T A C A C T G A C T G C T G A
A C G T A C G T A C G T A C G T A T G C G A C T A C T G C A G T G A T C A C G T T A C G T A C G A C G T

PB0060.1_Smad3_1/Jaspar

Match Rank:2
Score:0.57
Offset:0
Orientation:reverse strand
Alignment:YGAGCWGTCCGGR----
NNTNNTGTCTGGNNTNG
 A G T C A C T G C G T A A C T G A G T C C G A T A C T G A C G T A T G C G T A C A C T G A C T G C T G A A C G T A C G T A C G T A C G T
C A G T A T C G C G A T T C A G T G C A G A C T A C T G C A G T A G T C A C G T T C A G T C A G G C T A G C A T C G A T G A C T C A T G

POL001.1_MTE/Jaspar

Match Rank:3
Score:0.55
Offset:-3
Orientation:forward strand
Alignment:---YGAGCWGTCCGGR---
TTTCGAGCGGAACGGTCGC
 A C G T A C G T A C G T A G T C A C T G C G T A A C T G A G T C C G A T A C T G A C G T A T G C G T A C A C T G A C T G C T G A A C G T A C G T A C G T
A C G T G A C T A G C T A G T C C T A G C G T A C T A G A G T C A T C G T A C G C G T A C T A G A G T C A C T G A T C G C G A T G A T C T A C G A G C T

MyoG(bHLH)/C2C12-MyoG-ChIP-Seq(GSE36024)/Homer

Match Rank:4
Score:0.54
Offset:1
Orientation:reverse strand
Alignment:YGAGCWGTCCGGR
-CAGCTGTT----
 A G T C A C T G C G T A A C T G A G T C C G A T A C T G A C G T A T G C G T A C A C T G A C T G C T G A
A C G T A G T C C G T A A T C G A G T C A C G T A C T G A G C T A G C T A C G T A C G T A C G T A C G T

Tcf12/MA0521.1/Jaspar

Match Rank:5
Score:0.54
Offset:-2
Orientation:reverse strand
Alignment:--YGAGCWGTCCGGR
NNGCAGCTGTT----
 A C G T A C G T A G T C A C T G C G T A A C T G A G T C C G A T A C T G A C G T A T G C G T A C A C T G A C T G C T G A
A T G C G C A T A T C G A G T C C G T A A T C G A G T C A C G T A C T G A G C T A G C T A C G T A C G T A C G T A C G T

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:6
Score:0.54
Offset:2
Orientation:forward strand
Alignment:YGAGCWGTCCGGR
--VBSYGTCTGG-
 A G T C A C T G C G T A A C T G A G T C C G A T A C T G A C G T A T G C G T A C A C T G A C T G C T G A
A C G T A C G T T A C G A T C G T A G C G A T C A C T G A C G T A G T C A C G T C T A G A T C G A C G T

Myog/MA0500.1/Jaspar

Match Rank:7
Score:0.53
Offset:-2
Orientation:reverse strand
Alignment:--YGAGCWGTCCGGR
NNGCAGCTGTC----
 A C G T A C G T A G T C A C T G C G T A A C T G A G T C C G A T A C T G A C G T A T G C G T A C A C T G A C T G C T G A
A T G C G A C T A T C G A G T C C G T A A T C G A G T C A C G T A C T G A G C T A G T C A C G T A C G T A C G T A C G T

POL010.1_DCE_S_III/Jaspar

Match Rank:8
Score:0.53
Offset:1
Orientation:forward strand
Alignment:YGAGCWGTCCGGR
-CAGCC-------
 A G T C A C T G C G T A A C T G A G T C C G A T A C T G A C G T A T G C G T A C A C T G A C T G C T G A
A C G T T A G C C G T A A C T G A G T C A T G C A C G T A C G T A C G T A C G T A C G T A C G T A C G T

PH0170.1_Tgif2/Jaspar

Match Rank:9
Score:0.52
Offset:-2
Orientation:forward strand
Alignment:--YGAGCWGTCCGGR-
AACTAGCTGTCAATAC
 A C G T A C G T A G T C A C T G C G T A A C T G A G T C C G A T A C T G A C G T A T G C G T A C A C T G A C T G C T G A A C G T
G C T A C G T A A T G C A G C T C T G A A T C G G T A C A G C T C T A G C G A T A G T C C G T A G C T A C G A T T G C A T A G C

PH0169.1_Tgif1/Jaspar

Match Rank:10
Score:0.52
Offset:-2
Orientation:reverse strand
Alignment:--YGAGCWGTCCGGR--
NNNCAGCTGTCAATATN
 A C G T A C G T A G T C A C T G C G T A A C T G A G T C C G A T A C T G A C G T A T G C G T A C A C T G A C T G C T G A A C G T A C G T
G C T A T G A C A T C G A T G C T G C A A T C G G A T C A G C T A C T G C G A T A G T C C G T A G C T A C G A T T G C A G A C T G T A C