Information for 5-NGTTAATCGN (Motif 5)

C A G T A C T G A G C T G C A T T G C A C G T A A G C T A G T C T C A G T G C A
Reverse Opposite:
A C G T A G T C T C A G T C G A G C A T A C G T C G T A T C G A T G A C G C T A
p-value:1e-28
log p-value:-6.524e+01
Information Content per bp:1.396
Number of Target Sequences with motif271.0
Percentage of Target Sequences with motif37.96%
Number of Background Sequences with motif9378.8
Percentage of Background Sequences with motif19.85%
Average Position of motif in Targets50.3 +/- 26.0bp
Average Position of motif in Background49.8 +/- 32.7bp
Strand Bias (log2 ratio + to - strand density)0.3
Multiplicity (# of sites on avg that occur together)1.24
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

VENTX/MA0724.1/Jaspar

Match Rank:1
Score:0.83
Offset:2
Orientation:reverse strand
Alignment:NGTTAATCGN-
--CTAATCGNT
 C A G T A C T G A G C T G C A T T G C A C G T A A G C T A G T C T C A G T G C A A C G T
A C G T A C G T G A T C A C G T C G T A C G T A C A G T A G T C C T A G A C T G G C A T

BSX/MA0876.1/Jaspar

Match Rank:2
Score:0.82
Offset:2
Orientation:reverse strand
Alignment:NGTTAATCGN
--NTAATTGG
 C A G T A C T G A G C T G C A T T G C A C G T A A G C T A G T C T C A G T G C A
A C G T A C G T A G C T A C G T C G T A C G T A A G C T A C G T C T A G A T C G

BARX1/MA0875.1/Jaspar

Match Rank:3
Score:0.81
Offset:2
Orientation:reverse strand
Alignment:NGTTAATCGN
--NTAATTGN
 C A G T A C T G A G C T G C A T T G C A C G T A A G C T A G T C T C A G T G C A
A C G T A C G T A G T C A C G T C G T A C G T A A C G T A C G T C T A G A G T C

Nkx6.1(Homeobox)/Islet-Nkx6.1-ChIP-Seq(GSE40975)/Homer

Match Rank:4
Score:0.81
Offset:1
Orientation:forward strand
Alignment:NGTTAATCGN
-GKTAATGR-
 C A G T A C T G A G C T G C A T T G C A C G T A A G C T A G T C T C A G T G C A
A C G T A C T G C A G T A C G T C G T A C G T A A C G T A C T G C T G A A C G T

Barhl1/MA0877.1/Jaspar

Match Rank:5
Score:0.80
Offset:1
Orientation:forward strand
Alignment:NGTTAATCGN-
-GCTAATTGCT
 C A G T A C T G A G C T G C A T T G C A C G T A A G C T A G T C T C A G T G C A A C G T
A C G T A T C G G A T C G C A T C G T A C T G A C G A T A G C T C T A G A T G C A G C T

Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:6
Score:0.78
Offset:1
Orientation:reverse strand
Alignment:NGTTAATCGN-
-GTTAATGGCC
 C A G T A C T G A G C T G C A T T G C A C G T A A G C T A G T C T C A G T G C A A C G T
A C G T A T C G A G C T C A G T T C G A C T G A C G A T C A T G C T A G A T G C G A T C

OTX1/MA0711.1/Jaspar

Match Rank:7
Score:0.78
Offset:2
Orientation:forward strand
Alignment:NGTTAATCGN
--TTAATCCG
 C A G T A C T G A G C T G C A T T G C A C G T A A G C T A G T C T C A G T G C A
A C G T A C G T G A C T G C A T C G T A C G T A C A G T T A G C A T G C A T C G

Nkx2-5/MA0063.1/Jaspar

Match Rank:8
Score:0.77
Offset:2
Orientation:forward strand
Alignment:NGTTAATCGN
--TTAATTG-
 C A G T A C T G A G C T G C A T T G C A C G T A A G C T A G T C T C A G T G C A
A C G T A C G T C G A T A G C T C G T A C G T A A C G T G C A T C A T G A C G T

NKX6-2/MA0675.1/Jaspar

Match Rank:9
Score:0.77
Offset:2
Orientation:reverse strand
Alignment:NGTTAATCGN
--TTAATTAN
 C A G T A C T G A G C T G C A T T G C A C G T A A G C T A G T C T C A G T G C A
A C G T A C G T C G A T G A C T C G T A C G T A C G A T C A G T C T G A T A C G

PB0135.1_Hoxa3_2/Jaspar

Match Rank:10
Score:0.76
Offset:0
Orientation:reverse strand
Alignment:NGTTAATCGN----
CCTTAATNGNTTTT
 C A G T A C T G A G C T G C A T T G C A C G T A A G C T A G T C T C A G T G C A A C G T A C G T A C G T A C G T
A G T C A T G C G A C T C G A T C G T A C G T A A C G T T C A G A C T G G C A T C G A T G A C T C A G T A G C T