Homer Known Motif Enrichment Results (hs_EmbryonicEndoderm_HUES64_normal_HNF4A_SRX702025_homermotifs_10_13_16)

Homer de novo Motif Results
Gene Ontology Enrichment Results
Known Motif Enrichment Results (txt file)
Total Target Sequences = 767, Total Background Sequences = 47865
RankMotifNameP-valuelog P-pvalueq-value (Benjamini)# Target Sequences with Motif% of Targets Sequences with Motif# Background Sequences with Motif% of Background Sequences with MotifMotif File SVG
1 G T A C G C T A T C A G C T G A C T A G C A T G A G C T G A T C T G C A T C G A C T G A A C T G C A G T A G T C G A T C G C T A HNF4a(NR),DR1/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer1e-437-1.007e+030.0000411.053.59%1172.72.45%motif file (matrix) svg
2 A G C T C T G A C T A G C T A G A C T G T A G C T G C A T C G A C T G A C T A G C A T G A C G T A T G C T C G A RXR(NR),DR1/3T3L1-RXR-ChIP-Seq(GSE13511)/Homer1e-145-3.339e+020.0000317.041.33%3662.97.65%motif file (matrix) svg
3 A G T C T G C A T C G A C T G A A C T G C A T G A C G T A T G C G T C A T A C G Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer1e-143-3.299e+020.0000407.053.06%6657.413.91%motif file (matrix) svg
4 C G A T T A C G T G C A G T A C G A T C G A C T A G C T A C G T A T C G G T A C G A T C G T A C G A T C G T C A PPARE(NR),DR1/3T3L1-Pparg-ChIP-Seq(GSE13511)/Homer1e-142-3.277e+020.0000285.037.16%2886.56.03%motif file (matrix) svg
5 T C A G C T G A C T A G C A T G A C G T A T G C C T G A C T G A C T G A C T A G C A T G A C G T A T G C C T G A TR4(NR),DR1/Hela-TR4-ChIP-Seq(GSE24685)/Homer1e-93-2.163e+020.0000103.013.43%335.20.70%motif file (matrix) svg
6 A C G T C T A G C G T A A G T C G T A C A C G T A C G T A C G T G T C A G T A C T G A C G A C T Nur77(NR)/K562-NR4A1-ChIP-Seq(GSE31363)/Homer1e-52-1.205e+020.000068.08.87%310.20.65%motif file (matrix) svg
7 A G C T A T G C G A C T G C A T C G T A A G C T G T A C C G A T A T C G A G T C Gata6(Zf)/HUG1N-GATA6-ChIP-Seq(GSE51936)/Homer1e-40-9.388e+010.0000109.014.21%1402.02.93%motif file (matrix) svg
8 G C T A A T C G G C T A G A C T G C T A T C G A T A G C T C G A GATA3(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer1e-39-8.984e+010.0000137.017.86%2302.94.81%motif file (matrix) svg
9 T A G C G C T A A C T G C G T A A C G T C G T A C G T A T A C G T C A G T C G A Gata1(Zf)/K562-GATA1-ChIP-Seq(GSE18829)/Homer1e-38-8.912e+010.000088.011.47%938.21.96%motif file (matrix) svg
10 A G C T A G T C A T G C A G C T A C G T C G T A A C G T A G T C C G A T A T G C Gata2(Zf)/K562-GATA2-ChIP-Seq(GSE18829)/Homer1e-37-8.746e+010.000091.011.86%1032.52.16%motif file (matrix) svg
11 G C A T T C A G C T G A A T C G A C T G C G A T G A T C C T G A THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer1e-34-7.896e+010.0000351.045.76%12046.325.17%motif file (matrix) svg
12 T A C G A T G C G C T A A C T G C G T A A C G T C G T A C T G A T A C G T C G A Gata4(Zf)/Heart-Gata4-ChIP-Seq(GSE35151)/Homer1e-33-7.656e+010.0000105.013.69%1589.13.32%motif file (matrix) svg
13 T C G A T C A G T C G A A C T G C A T G A C G T A G T C C T G A COUP-TFII(NR)/Artia-Nr2f2-ChIP-Seq(GSE46497)/Homer1e-31-7.280e+010.0000194.025.29%4917.010.28%motif file (matrix) svg
14 C A T G A G C T T A C G G T C A G T A C T A G C A G C T G A C T A T C G T C G A Esrrb(NR)/mES-Esrrb-ChIP-Seq(GSE11431)/Homer1e-24-5.710e+010.000092.011.99%1600.03.34%motif file (matrix) svg
15 A T C G G A T C G C A T C G T A G T C A A C G T A T G C A G T C CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer1e-18-4.326e+010.0000158.020.60%4652.29.72%motif file (matrix) svg
16 G C T A G A C T G A C T T G C A C G T A A G T C C G T A T A G C G A T C G A C T Eomes(T-box)/H9-Eomes-ChIP-Seq(GSE26097)/Homer1e-15-3.676e+010.0000138.017.99%4098.08.56%motif file (matrix) svg
17 A T G C G A C T A C G T C T A G A C G T A C G T A C G T C T G A G A T C G C T A A G C T C G T A Foxa2(Forkhead)/Liver-Foxa2-ChIP-Seq(GSE25694)/Homer1e-13-3.074e+010.000056.07.30%1077.12.25%motif file (matrix) svg
18 T C A G C T A G C T A G T G C A C G A T C G A T C G T A C T A G GSC(Homeobox)/FrogEmbryos-GSC-ChIP-Seq(DRA000576)/Homer1e-11-2.740e+010.000072.09.39%1766.83.69%motif file (matrix) svg
19 G A T C G T A C C G A T A C T G A C T G C G T A C G T A A C G T A C T G G A T C TEAD(TEA)/Fibroblast-PU.1-ChIP-Seq(Unpublished)/Homer1e-11-2.629e+010.000049.06.39%963.32.01%motif file (matrix) svg
20 T G C A A G C T C T G A A T C G G A C T C T A G G T A C G A T C G T C A A G T C G T A C G A C T C T A G A T C G G C A T C A T G C A T G G A T C G T A C C T G A CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer1e-10-2.382e+010.000025.03.26%297.80.62%motif file (matrix) svg
21 T A G C T A G C G C A T C A T G A C T G G C T A C G T A A C G T A C T G G A T C TEAD4(TEA)/Tropoblast-Tead4-ChIP-Seq(GSE37350)/Homer1e-9-2.231e+010.000060.07.82%1499.03.13%motif file (matrix) svg
22 C A T G T A C G T A G C G A T C G A T C A T G C G T A C G A C T T C A G A T G C C G A T A T C G C A G T A C T G G T A C Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer1e-9-2.171e+010.000073.09.52%2051.34.29%motif file (matrix) svg
23 A T G C G A T C C G T A A G C T C A G T A T C G G C A T A G C T G A C T A C T G Sox17(HMG)/Endoderm-Sox17-ChIP-Seq(GSE61475)/Homer1e-8-2.062e+010.000047.06.13%1067.32.23%motif file (matrix) svg
24 C T G A T C G A C G T A A T G C C G T A C G T A C G A T C T A G T C A G G A T C Sox15(HMG)/CPA-Sox15-ChIP-Seq(GSE62909)/Homer1e-8-2.056e+010.000065.08.47%1773.73.71%motif file (matrix) svg
25 A T G C G T A C C G T A A G C T G C A T T A C G A G C T A G C T A G T C A G C T Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer1e-8-2.054e+010.000086.011.21%2674.55.59%motif file (matrix) svg
26 A C G T C T A G A G C T A C G T A C G T C T G A A G T C G A C T A G C T C G T A FOXM1(Forkhead)/MCF7-FOXM1-ChIP-Seq(GSE72977)/Homer1e-8-1.918e+010.000050.06.52%1233.52.58%motif file (matrix) svg
27 A G T C T A G C G A C T A C G T C T A G A C G T A C G T A C G T C T G A A G T C G C T A G A C T C G T A C T A G A C T G Foxa3(Forkhead)/Liver-Foxa3-ChIP-Seq(GSE77670)/Homer1e-8-1.886e+010.000024.03.13%352.70.74%motif file (matrix) svg
28 A T G C A G T C G A T C C G T A A C G T A C G T A C T G A C G T A G C T G A T C Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer1e-7-1.838e+010.000057.07.43%1545.83.23%motif file (matrix) svg
29 C T A G T C A G C A G T T C A G A C T G A C T G G A T C C T A G A C T G C T A G T C A G A T G C KLF14(Zf)/HEK293-KLF14.GFP-ChIP-Seq(GSE58341)/Homer1e-7-1.818e+010.0000155.020.21%6195.212.95%motif file (matrix) svg
30 G C T A T C G A C G T A C T A G A G C T G T C A G T C A C G T A A G T C C G T A FOXA1(Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer1e-7-1.816e+010.000054.07.04%1433.33.00%motif file (matrix) svg
31 T G A C G C T A T G A C C G T A T C A G G A T C C G T A C A T G C A T G C T A G C T A G C T A G Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer1e-7-1.727e+010.000063.08.21%1850.23.87%motif file (matrix) svg
32 A T G C G A T C C G A T A C G T A C G T A C T G C A G T A G C T Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer1e-7-1.723e+010.000097.012.65%3393.47.09%motif file (matrix) svg
33 G C T A T C G A C G T A C T A G A G C T G T C A G T C A C G T A A G T C C G T A FOXA1(Forkhead)/MCF7-FOXA1-ChIP-Seq(GSE26831)/Homer1e-7-1.722e+010.000044.05.74%1078.12.25%motif file (matrix) svg
34 C T G A C T G A C A T G A T C G A G C T A T C G G A C T C A T G C T G A G T C A Tbr1(T-box)/Cortex-Tbr1-ChIP-Seq(GSE71384)/Homer1e-7-1.689e+010.000077.010.04%2488.35.20%motif file (matrix) svg
35 C T G A A T G C G C T A G C A T A T G C C G T A T C G A C T G A C T A G T C A G T A C G G T C A Tcf4(HMG)/Hct116-Tcf4-ChIP-Seq(SRA012054)/Homer1e-7-1.669e+010.000036.04.69%798.51.67%motif file (matrix) svg
36 A T G C A G T C G C A T A G C T A C G T T C A G C G A T A G C T G A T C A T C G Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer1e-7-1.655e+010.000092.011.99%3205.96.70%motif file (matrix) svg
37 A T G C G A T C C G A T C T A G A C T G G C T A C G T A A G C T A C T G A G C T TEAD2(TEA)/Py2T-Tead2-ChIP-Seq(GSE55709)/Homer1e-7-1.635e+010.000037.04.82%846.71.77%motif file (matrix) svg
38 T A G C A G T C T G A C A G T C C T A G A T C G A G T C C A T G T G A C A G T C G T A C A G T C A G T C G C A T C T A G A T C G G C A T A C T G A T C G G A T C BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer1e-6-1.572e+010.000028.03.65%548.41.15%motif file (matrix) svg
39 A G C T T G A C C G A T C G A T C T A G A C G T C A G T C A G T G C T A A G T C FOXK1(Forkhead)/HEK293-FOXK1-ChIP-Seq(GSE51673)/Homer1e-6-1.499e+010.000046.06.00%1251.12.61%motif file (matrix) svg
40 A T C G G A C T C G A T C G T A C G T A C A G T G A T C G A T C G A T C A G C T Otx2(Homeobox)/EpiLC-Otx2-ChIP-Seq(GSE56098)/Homer1e-6-1.423e+010.000045.05.87%1245.32.60%motif file (matrix) svg
41 A T G C C T G A A T C G T A C G A G T C C G A T T C A G C G A T C T A G A G C T G T C A G T C A C G T A A G T C C G T A T A C G C T G A Fox:Ebox(Forkhead,bHLH)/Panc1-Foxa2-ChIP-Seq(GSE47459)/Homer1e-6-1.419e+010.000050.06.52%1456.13.04%motif file (matrix) svg
42 T A G C G T A C A G T C G T A C C G A T A G T C A G T C A G T C A G T C A G T C C G T A G A T C Zfp281(Zf)/ES-Zfp281-ChIP-Seq(GSE81042)/Homer1e-6-1.392e+010.000028.03.65%601.81.26%motif file (matrix) svg
43 C G A T C T G A C G T A C A G T A G T C G A T C G A T C A C T G Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer1e-5-1.369e+010.0000212.027.64%9780.520.44%motif file (matrix) svg
44 C T G A T C A G C A G T C T A G A C T G C T A G G A T C A T C G A C T G C T G A T C A G G A T C Sp5(Zf)/mES-Sp5.Flag-ChIP-Seq(GSE72989)/Homer1e-5-1.289e+010.000091.011.86%3444.97.20%motif file (matrix) svg
45 A G T C A G T C C G A T A C G T A C G T A C T G A C G T A G C T A G T C A G T C Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer1e-5-1.264e+010.000053.06.91%1672.13.49%motif file (matrix) svg
46 T C G A A C T G C A T G A G C T A G T C C G T A C T G A C T A G A C T G C G A T A T G C C T G A RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer1e-5-1.210e+010.000018.02.35%315.30.66%motif file (matrix) svg
47 C T A G A C T G C T A G T C A G T C A G T A C G C T A G A C T G Maz(Zf)/HepG2-Maz-ChIP-Seq(GSE31477)/Homer1e-4-1.099e+010.0001127.016.56%5488.911.47%motif file (matrix) svg
48 C T G A A T G C G C T A C G A T A T G C C G T A C G T A C G T A C T A G T A C G Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer1e-4-1.096e+010.000121.02.74%446.40.93%motif file (matrix) svg
49 C G T A C T A G C A T G A G C T A C T G C G A T A T C G C G T A G T C A G T C A Tbet(T-box)/CD8-Tbet-ChIP-Seq(GSE33802)/Homer1e-4-1.075e+010.000255.07.17%1885.23.94%motif file (matrix) svg
50 C T G A C T A G A T C G G C A T A C T G G T A C A T G C C G T A A C T G G C T A A G T C C G T A Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer1e-4-1.075e+010.000219.02.48%383.60.80%motif file (matrix) svg
51 A C G T G A C T T A G C C G T A C T G A C A T G C T A G G A C T G A T C C G T A Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer1e-4-1.055e+010.000256.07.30%1946.04.07%motif file (matrix) svg
52 C T G A T C A G G T A C G C T A A C T G T G A C G C A T C A T G SCL(bHLH)/HPC7-Scl-ChIP-Seq(GSE13511)/Homer1e-3-9.086e+000.0008277.036.11%14287.329.86%motif file (matrix) svg
53 A G T C G T A C A G C T C T A G A G T C C G A T A C T G C G T A A C T G G T C A Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer1e-3-9.079e+000.000859.07.69%2204.84.61%motif file (matrix) svg
54 T A C G T A G C G C T A C G A T C T A G A C G T C A G T C A G T G C T A A G T C G T C A G C A T FOXK2(Forkhead)/U2OS-FOXK2-ChIP-Seq(E-MTAB-2204)/Homer1e-3-8.946e+000.000930.03.91%880.61.84%motif file (matrix) svg
55 C G A T C T A G A C G T G T C A C G T A C G T A A G T C C G T A Foxo3(Forkhead)/U2OS-Foxo3-ChIP-Seq(E-MTAB-2701)/Homer1e-3-8.824e+000.001029.03.78%844.21.76%motif file (matrix) svg
56 G T C A T G C A G C T A A G T C C G T A A C T G T G A C G C A T T C A G C A G T Ap4(bHLH)/AML-Tfap4-ChIP-Seq(GSE45738)/Homer1e-3-8.757e+000.001086.011.21%3594.27.51%motif file (matrix) svg
57 A C G T G A C T A T G C G C T A C T G A C T A G A C T G G A C T A G T C C G T A Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer1e-3-8.188e+000.001843.05.61%1510.33.16%motif file (matrix) svg
58 C G T A G C T A C G A T C T A G A C G T G T C A C G T A C G T A A G T C C G T A T G C A T A C G FoxL2(Forkhead)/Ovary-FoxL2-ChIP-Seq(GSE60858)/Homer1e-3-7.961e+000.002228.03.65%847.81.77%motif file (matrix) svg
59 A G C T A G T C A G T C A C G T C T A G A C G T A C G T A C G T C G T A A G T C G A T C C G T A FOXP1(Forkhead)/H9-FOXP1-ChIP-Seq(GSE31006)/Homer1e-3-7.235e+000.004418.02.35%467.80.98%motif file (matrix) svg
60 T A C G C T A G A T G C G A T C G T A C A G T C C T A G A G T C A G T C A G T C G T A C A G T C Sp1(Zf)/Promoter/Homer1e-3-7.227e+000.004428.03.65%889.81.86%motif file (matrix) svg
61 G C A T G C A T C T G A A C G T C T G A A C G T C G T A C G T A C G T A A G T C G T C A G T C A Foxf1(Forkhead)/Lung-Foxf1-ChIP-Seq(GSE77951)/Homer1e-3-7.139e+000.004727.03.52%850.91.78%motif file (matrix) svg
62 T C A G C A T G C A T G A C T G A C T G A G C T A C T G A C G T A C T G C A G T A T G C A G T C KLF10(Zf)/HEK293-KLF10.GFP-ChIP-Seq(GSE58341)/Homer1e-2-6.873e+000.006135.04.56%1232.32.58%motif file (matrix) svg
63 T C A G T G A C G T A C T G C A G T A C C T A G G T A C A T G C A G T C G T C A A G T C G A C T Klf9(Zf)/GBM-Klf9-ChIP-Seq(GSE62211)/Homer1e-2-6.622e+000.007729.03.78%972.92.03%motif file (matrix) svg
64 C A G T T C A G G A T C A C T G A C G T C T A G A C T G A C T G G A C T C T A G Egr1(Zf)/K562-Egr1-ChIP-Seq(GSE32465)/Homer1e-2-6.613e+000.007749.06.39%1933.84.04%motif file (matrix) svg
65 T C G A A G T C C G T A A T C G T A G C A C G T A C T G A G C T A C G T A G T C Ptf1a(bHLH)/Panc1-Ptf1a-ChIP-Seq(GSE47459)/Homer1e-2-6.488e+000.0085163.021.25%8162.817.06%motif file (matrix) svg
66 G A C T T C A G C T A G A G T C A G T C G T A C A G T C C T G A A G T C A G T C A G T C G A C T A G T C A C T G A T G C KLF3(Zf)/MEF-Klf3-ChIP-Seq(GSE44748)/Homer1e-2-6.433e+000.008938.04.95%1409.22.94%motif file (matrix) svg
67 C T G A T C A G C T G A C T A G C A T G A C G T A T G C C G T A A T G C G C A T T C A G C T G A A C T G A C G T C A G T A G T C C G T A C A G T C T A G C A T G VDR(NR),DR3/GM10855-VDR+vitD-ChIP-Seq(GSE22484)/Homer1e-2-6.335e+000.009617.02.22%466.10.97%motif file (matrix) svg
68 G T A C C A G T A C T G A C T G A C T G G A T C A C T G A C G T A C T G A C T G A G T C G A T C KLF6(Zf)/PDAC-KLF6-ChIP-Seq(GSE64557)/Homer1e-2-5.884e+000.014980.010.43%3635.17.60%motif file (matrix) svg
69 C T G A C T A G A T C G A G C T A C T G G A C T A G T C C T G A Tbx5(T-box)/HL1-Tbx5.biotin-ChIP-Seq(GSE21529)/Homer1e-2-5.799e+000.0160169.022.03%8647.118.07%motif file (matrix) svg
70 T C G A A G T C C G T A A T C G A T G C C G A T A C T G A G T C A G C T A C T G Tcf12(bHLH)/GM12878-Tcf12-ChIP-Seq(GSE32465)/Homer1e-2-5.709e+000.017270.09.13%3124.06.53%motif file (matrix) svg
71 T C G A T G A C G T A C C G T A C A G T T G A C A C G T A C T G A G C T A G C T NeuroG2(bHLH)/Fibroblast-NeuroG2-ChIP-Seq(GSE75910)/Homer1e-2-5.705e+000.017282.010.69%3769.47.88%motif file (matrix) svg
72 T G A C C T A G A C T G T A G C C G A T A C T G A T G C C A T G A T C G A T C G A T C G T A G C C T G A T A G C G C T A A C T G C G T A A G C T C G T A C T G A GATA:SCL(Zf,bHLH)/Ter119-SCL-ChIP-Seq(GSE18720)/Homer1e-2-5.497e+000.020710.01.30%226.30.47%motif file (matrix) svg
73 C G T A A T G C C G A T A C G T A G T C C G T A C G T A C G T A C T A G A T C G TCFL2(HMG)/K562-TCF7L2-ChIP-Seq(GSE29196)/Homer1e-2-5.367e+000.02338.01.04%159.70.33%motif file (matrix) svg
74 C G T A C T A G A C T G A C T G G A C T C T A G C A G T C T A G C A T G G A T C KLF5(Zf)/LoVo-KLF5-ChIP-Seq(GSE49402)/Homer1e-2-5.338e+000.023695.012.39%4539.29.49%motif file (matrix) svg
75 C T G A C T G A C T A G T C G A C G T A A T G C C G T A A C T G C G T A A C G T C T G A C G A T A G C T C G T A A C G T A G T C C G A T T A C G G T C A G C A T GATA(Zf),IR3/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer1e-2-5.074e+000.03047.00.91%133.60.28%motif file (matrix) svg
76 C G T A T G A C T C G A A G T C C G T A A T C G A T G C A C G T A C T G A G T C E2A(bHLH)/proBcell-E2A-ChIP-Seq(GSE21978)/Homer1e-2-5.073e+000.030499.012.91%4807.510.05%motif file (matrix) svg
77 C G T A A C T G G T C A A C G T A T C G C A G T C T A G T C A G C G T A A C T G C G T A A C G T C G T A C T G A T A C G GATA3(Zf),DR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer1e-2-5.026e+000.03105.00.65%72.30.15%motif file (matrix) svg
78 T C G A A C G T C A T G G C T A T A G C C G A T G T A C G C T A A C G T A T G C AP-1(bZIP)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer1e-2-5.012e+000.031132.04.17%1239.52.59%motif file (matrix) svg
79 T G A C A T G C C G T A A T C G A T G C C A G T C A T G A C T G A G T C G T A C HEB(bHLH)/mES-Heb-ChIP-Seq(GSE53233)/Homer1e-2-4.813e+000.0374123.016.04%6212.112.98%motif file (matrix) svg
80 G A T C T C G A A G T C C G A T C G A T A G T C A T G C A C T G A T C G G A C T Elk1(ETS)/Hela-Elk1-ChIP-Seq(GSE31477)/Homer1e-2-4.747e+000.039537.04.82%1515.43.17%motif file (matrix) svg