Information for 9-CYATTGTCTTCTKTCA (Motif 9)

A G T C A G C T C T G A A G C T A C G T A C T G A C G T A T G C A C G T A C G T A G T C A G C T A C G T G A C T A T G C G T C A
Reverse Opposite:
A C G T T A C G C G T A T G A C C T G A A C T G C G T A C G T A A T C G C G T A A G T C C G T A C T G A A G C T C T A G A C T G
p-value:1e-13
log p-value:-3.141e+01
Information Content per bp:1.792
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.78%
Number of Background Sequences with motif1.4
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets38.8 +/- 25.5bp
Average Position of motif in Background76.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Sox6/MA0515.1/Jaspar

Match Rank:1
Score:0.70
Offset:0
Orientation:forward strand
Alignment:CYATTGTCTTCTKTCA
CCATTGTTTT------
 A G T C A G C T C T G A A G C T A C G T A C T G A C G T A T G C A C G T A C G T A G T C A G C T A C G T G A C T A T G C G T C A
A G T C A G T C C G T A A C G T A C G T A C T G A C G T A G C T G A C T A G C T A C G T A C G T A C G T A C G T A C G T A C G T

PB0168.1_Sox14_2/Jaspar

Match Rank:2
Score:0.69
Offset:-3
Orientation:reverse strand
Alignment:---CYATTGTCTTCTKTCA
NNNCCATTGTGTNAN----
 A C G T A C G T A C G T A G T C A G C T C T G A A G C T A C G T A C T G A C G T A T G C A C G T A C G T A G T C A G C T A C G T G A C T A T G C G T C A
A T C G T G A C A C T G A G T C G A T C C G T A A C G T A C G T T A C G G C A T A T C G A G C T T C A G T G C A T C A G A C G T A C G T A C G T A C G T

Sox15(HMG)/CPA-Sox15-ChIP-Seq(GSE62909)/Homer

Match Rank:3
Score:0.68
Offset:-1
Orientation:reverse strand
Alignment:-CYATTGTCTTCTKTCA
NCCATTGTTY-------
 A C G T A G T C A G C T C T G A A G C T A C G T A C T G A C G T A T G C A C G T A C G T A G T C A G C T A C G T G A C T A T G C G T C A
C T A G A G T C G A T C G C T A C G A T A C G T A T C G A C G T A G C T G A C T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Sox17(HMG)/Endoderm-Sox17-ChIP-Seq(GSE61475)/Homer

Match Rank:4
Score:0.67
Offset:0
Orientation:forward strand
Alignment:CYATTGTCTTCTKTCA
CCATTGTTYB------
 A G T C A G C T C T G A A G C T A C G T A C T G A C G T A T G C A C G T A C G T A G T C A G C T A C G T G A C T A T G C G T C A
A T G C G A T C C G T A A G C T C A G T A T C G G C A T A G C T G A C T A C T G A C G T A C G T A C G T A C G T A C G T A C G T

Sox17/MA0078.1/Jaspar

Match Rank:5
Score:0.65
Offset:-1
Orientation:forward strand
Alignment:-CYATTGTCTTCTKTCA
CTCATTGTC--------
 A C G T A G T C A G C T C T G A A G C T A C G T A C T G A C G T A T G C A C G T A C G T A G T C A G C T A C G T G A C T A T G C G T C A
G A C T G A C T G A T C C G T A A G C T A C G T A C T G A C G T A T G C A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer

Match Rank:6
Score:0.64
Offset:0
Orientation:forward strand
Alignment:CYATTGTCTTCTKTCA
CCATTGTTNY------
 A G T C A G C T C T G A A G C T A C G T A C T G A C G T A T G C A C G T A C G T A G T C A G C T A C G T G A C T A T G C G T C A
A T G C G T A C C G T A A G C T G C A T T A C G A G C T A G C T A G T C A G C T A C G T A C G T A C G T A C G T A C G T A C G T

Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer

Match Rank:7
Score:0.64
Offset:0
Orientation:forward strand
Alignment:CYATTGTCTTCTKTCA
CCWTTGTY--------
 A G T C A G C T C T G A A G C T A C G T A C T G A C G T A T G C A C G T A C G T A G T C A G C T A C G T G A C T A T G C G T C A
A T G C G A T C C G A T A C G T A C G T A C T G C A G T A G C T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Sox3/MA0514.1/Jaspar

Match Rank:8
Score:0.64
Offset:0
Orientation:forward strand
Alignment:CYATTGTCTTCTKTCA
CCTTTGTTTT------
 A G T C A G C T C T G A A G C T A C G T A C T G A C G T A T G C A C G T A C G T A G T C A G C T A C G T G A C T A T G C G T C A
A T G C A G T C C G A T A C G T A C G T A T C G A C G T A G C T A G C T A G C T A C G T A C G T A C G T A C G T A C G T A C G T

Oct4:Sox17(POU,Homeobox,HMG)/F9-Sox17-ChIP-Seq(GSE44553)/Homer

Match Rank:9
Score:0.63
Offset:0
Orientation:forward strand
Alignment:CYATTGTCTTCTKTCA
CCATTGTATGCAAAT-
 A G T C A G C T C T G A A G C T A C G T A C T G A C G T A T G C A C G T A C G T A G T C A G C T A C G T G A C T A T G C G T C A
A G T C G A T C G C T A C G A T A C G T T A C G G C A T C T G A G A C T A C T G A G T C G C T A C T G A T C G A C A G T A C G T

SOX9/MA0077.1/Jaspar

Match Rank:10
Score:0.62
Offset:0
Orientation:forward strand
Alignment:CYATTGTCTTCTKTCA
CCATTGTTC-------
 A G T C A G C T C T G A A G C T A C G T A C T G A C G T A T G C A C G T A C G T A G T C A G C T A C G T G A C T A T G C G T C A
A G T C G A T C G C T A C A G T C G A T T A C G C G A T G C A T G A T C A C G T A C G T A C G T A C G T A C G T A C G T A C G T