Information for 1-RGKBCAAAGTCCA (Motif 1)

C T G A T C A G C A T G A T G C G A T C C T G A C T G A C T G A A C T G C A G T A G T C A G T C C T G A
Reverse Opposite:
G A C T C T A G T C A G G T C A G T A C A G C T A G C T A G C T C T A G T A C G G T A C A G T C G A C T
p-value:1e-604
log p-value:-1.393e+03
Information Content per bp:1.677
Number of Target Sequences with motif457.0
Percentage of Target Sequences with motif59.58%
Number of Background Sequences with motif746.5
Percentage of Background Sequences with motif1.56%
Average Position of motif in Targets51.6 +/- 21.8bp
Average Position of motif in Background49.0 +/- 34.0bp
Strand Bias (log2 ratio + to - strand density)-0.1
Multiplicity (# of sites on avg that occur together)1.04
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

HNF4G/MA0484.1/Jaspar

Match Rank:1
Score:0.97
Offset:-2
Orientation:forward strand
Alignment:--RGKBCAAAGTCCA
AGAGTCCAAAGTCCA
 A C G T A C G T C T G A T C A G C A T G A T G C G A T C C T G A C T G A C T G A A C T G C A G T A G T C A G T C C T G A
C G T A T C A G C T G A C T A G C A G T A G T C A G T C T G C A T C G A C T G A C A T G C A G T A G T C G A T C G C T A

HNF4a(NR),DR1/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer

Match Rank:2
Score:0.96
Offset:-3
Orientation:forward strand
Alignment:---RGKBCAAAGTCCA
CANAGNNCAAAGTCCA
 A C G T A C G T A C G T C T G A T C A G C A T G A T G C G A T C C T G A C T G A C T G A A C T G C A G T A G T C A G T C C T G A
G T A C G C T A T C A G C T G A C T A G C A T G A G C T G A T C T G C A T C G A C T G A A C T G C A G T A G T C G A T C G C T A

Hnf4a/MA0114.3/Jaspar

Match Rank:3
Score:0.92
Offset:-1
Orientation:forward strand
Alignment:-RGKBCAAAGTCCA--
GGGGTCAAAGTCCAAT
 A C G T C T G A T C A G C A T G A T G C G A T C C T G A C T G A C T G A A C T G C A G T A G T C A G T C C T G A A C G T A C G T
T C A G T C A G C T A G C A T G C A G T A G T C T C G A C T G A C T G A A C T G A C G T A G T C A G T C C T G A T C G A G A C T

PB0134.1_Hnf4a_2/Jaspar

Match Rank:4
Score:0.83
Offset:1
Orientation:forward strand
Alignment:RGKBCAAAGTCCA----
-GGCAAAAGTCCAATAA
 C T G A T C A G C A T G A T G C G A T C C T G A C T G A C T G A A C T G C A G T A G T C A G T C C T G A A C G T A C G T A C G T A C G T
A C G T A C G T A C G T G A T C G T A C C G T A C T G A C T G A A C T G A C G T G T A C A G T C C T G A G T C A C G A T G T C A G C A T

RXR(NR),DR1/3T3L1-RXR-ChIP-Seq(GSE13511)/Homer

Match Rank:5
Score:0.80
Offset:-1
Orientation:forward strand
Alignment:-RGKBCAAAGTCCA
TAGGGCAAAGGTCA
 A C G T C T G A T C A G C A T G A T G C G A T C C T G A C T G A C T G A A C T G C A G T A G T C A G T C C T G A
A G C T C T G A C T A G C T A G A C T G T A G C T G C A T C G A C T G A C T A G C A T G A C G T A T G C T C G A

Pparg::Rxra/MA0065.2/Jaspar

Match Rank:6
Score:0.79
Offset:-2
Orientation:forward strand
Alignment:--RGKBCAAAGTCCA
GTAGGGCAAAGGTCA
 A C G T A C G T C T G A T C A G C A T G A T G C G A T C C T G A C T G A C T G A A C T G C A G T A G T C A G T C C T G A
A T C G A G C T C T G A C T A G C T A G C A T G T A G C T G C A T C G A C T G A C T A G C A T G A C G T A T G C G C T A

PPARE(NR),DR1/3T3L1-Pparg-ChIP-Seq(GSE13511)/Homer

Match Rank:7
Score:0.79
Offset:-1
Orientation:reverse strand
Alignment:-RGKBCAAAGTCCA
TGGGGCAAAGGTCA
 A C G T C T G A T C A G C A T G A T G C G A T C C T G A C T G A C T G A A C T G C A G T A G T C A G T C C T G A
C A G T C T A G C A T G C T A G C A T G T A G C T G C A T C G A C T G A C T A G C A T G A C G T A T G C G C T A

RXRG/MA0856.1/Jaspar

Match Rank:8
Score:0.78
Offset:-1
Orientation:forward strand
Alignment:-RGKBCAAAGTCCA
GGGGTCAAAGGTCA
 A C G T C T G A T C A G C A T G A T G C G A T C C T G A C T G A C T G A A C T G C A G T A G T C A G T C C T G A
T C A G T C A G C A T G C A T G A C G T A G T C C T G A C T G A C T G A C A T G C A T G A C G T A G T C T C G A

Rxra/MA0512.2/Jaspar

Match Rank:9
Score:0.77
Offset:-1
Orientation:forward strand
Alignment:-RGKBCAAAGTCCA
GGGGTCAAAGGTCA
 A C G T C T G A T C A G C A T G A T G C G A T C C T G A C T G A C T G A A C T G C A G T A G T C A G T C C T G A
T C A G T C A G C A T G C A T G A C G T A G T C T C G A C T G A T C G A A T C G A C T G A C G T A G T C T C G A

Nr2f6/MA0677.1/Jaspar

Match Rank:10
Score:0.77
Offset:-1
Orientation:forward strand
Alignment:-RGKBCAAAGTCCA
GAGGTCAAAGGTCA
 A C G T C T G A T C A G C A T G A T G C G A T C C T G A C T G A C T G A A C T G C A G T A G T C A G T C C T G A
T C A G T C G A C A T G C A T G A C G T A G T C C G T A C T G A T C G A A C T G C A T G A C G T A G T C C T G A