Information for 4-GCTCTCAAAGCMGGAG (Motif 7)

A T C G A G T C A G C T A G T C A G C T A G T C C T G A T C G A C T G A A C T G T A G C G T A C C T A G C T A G G T C A A C T G
Reverse Opposite:
G T A C A C G T G A T C A G T C C A T G A C T G A G T C A G C T A G C T A G C T T C A G C T G A C T A G C T G A C T A G A T G C
p-value:1e-11
log p-value:-2.654e+01
Information Content per bp:1.745
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif1.50%
Number of Background Sequences with motif8.9
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets55.1 +/- 27.3bp
Average Position of motif in Background45.0 +/- 25.0bp
Strand Bias (log2 ratio + to - strand density)1.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

TATA-Box(TBP)/Promoter/Homer

Match Rank:1
Score:0.59
Offset:-1
Orientation:reverse strand
Alignment:-GCTCTCAAAGCMGGAG
GNCTATAAAAGG-----
 A C G T A T C G A G T C A G C T A G T C A G C T A G T C C T G A T C G A C T G A A C T G T A G C G T A C C T A G C T A G G T C A A C T G
A T C G A T C G A T G C A G C T G C T A A C G T C G T A C G T A C T G A C T G A C T A G T A C G A C G T A C G T A C G T A C G T A C G T

Nkx2.2(Homeobox)/NPC-Nkx2.2-ChIP-Seq(GSE61673)/Homer

Match Rank:2
Score:0.56
Offset:-1
Orientation:reverse strand
Alignment:-GCTCTCAAAGCMGGAG
NSCACTYVAV-------
 A C G T A T C G A G T C A G C T A G T C A G C T A G T C C T G A T C G A C T G A A C T G T A G C G T A C C T A G C T A G G T C A A C T G
C T A G T A G C A G T C G C T A G A T C A C G T G A T C T C G A C T G A T A C G A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:3
Score:0.55
Offset:-2
Orientation:forward strand
Alignment:--GCTCTCAAAGCMGGAG
AASCACTCAA--------
 A C G T A C G T A T C G A G T C A G C T A G T C A G C T A G T C C T G A T C G A C T G A A C T G T A G C G T A C C T A G C T A G G T C A A C T G
C T G A C T G A T A G C G A T C G C T A G T A C A C G T G A T C T G C A C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer

Match Rank:4
Score:0.54
Offset:-1
Orientation:forward strand
Alignment:-GCTCTCAAAGCMGGAG
RSCACTYRAG-------
 A C G T A T C G A G T C A G C T A G T C A G C T A G T C C T G A T C G A C T G A A C T G T A G C G T A C C T A G C T A G G T C A A C T G
C T A G T A C G A G T C C G T A A G T C A C G T A G T C T C G A C G T A T A C G A C G T A C G T A C G T A C G T A C G T A C G T A C G T

PB0205.1_Zic1_2/Jaspar

Match Rank:5
Score:0.52
Offset:2
Orientation:forward strand
Alignment:GCTCTCAAAGCMGGAG-
--CCACACAGCAGGAGA
 A T C G A G T C A G C T A G T C A G C T A G T C C T G A T C G A C T G A A C T G T A G C G T A C C T A G C T A G G T C A A C T G A C G T
A C G T A C G T A G T C G T A C C G T A T G A C T C G A A G T C G C T A C T A G A G T C C T G A A C T G A C T G G T C A T C A G C G T A

Nkx2-5(var.2)/MA0503.1/Jaspar

Match Rank:6
Score:0.51
Offset:-2
Orientation:forward strand
Alignment:--GCTCTCAAAGCMGGAG
AGCCACTCAAG-------
 A C G T A C G T A T C G A G T C A G C T A G T C A G C T A G T C C T G A T C G A C T G A A C T G T A G C G T A C C T A G C T A G G T C A A C T G
C T G A C T A G T A G C A G T C G C T A A G T C A C G T A G T C G T C A C T G A T A C G A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:7
Score:0.50
Offset:5
Orientation:forward strand
Alignment:GCTCTCAAAGCMGGAG-
-----CACAGCAGGGGG
 A T C G A G T C A G C T A G T C A G C T A G T C C T G A T C G A C T G A A C T G T A G C G T A C C T A G C T A G G T C A A C T G A C G T
A C G T A C G T A C G T A C G T A C G T T G A C G C T A T G A C C G T A T C A G G A T C C G T A C A T G C A T G C T A G C T A G C T A G

PB0206.1_Zic2_2/Jaspar

Match Rank:8
Score:0.50
Offset:2
Orientation:forward strand
Alignment:GCTCTCAAAGCMGGAG-
--CCACACAGCAGGAGA
 A T C G A G T C A G C T A G T C A G C T A G T C C T G A T C G A C T G A A C T G T A G C G T A C C T A G C T A G G T C A A C T G A C G T
A C G T A C G T G A T C G A T C C G T A T G A C T C G A A G T C G C T A C T A G A G T C C T G A A C T G A C T G G T C A T C A G C G T A

Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer

Match Rank:9
Score:0.49
Offset:4
Orientation:reverse strand
Alignment:GCTCTCAAAGCMGGAG---
----DCHCAGCAGGRGGCC
 A T C G A G T C A G C T A G T C A G C T A G T C C T G A T C G A C T G A A C T G T A G C G T A C C T A G C T A G G T C A A C T G A C G T A C G T A C G T
A C G T A C G T A C G T A C G T C A T G T G A C G T C A A T G C G C T A T A C G A G T C C T G A C A T G A T C G C T A G C T A G A T C G A T G C G T A C

TFAP2B(var.3)/MA0813.1/Jaspar

Match Rank:10
Score:0.48
Offset:-1
Orientation:forward strand
Alignment:-GCTCTCAAAGCMGGAG
TGCCCTGAGGGCA----
 A C G T A T C G A G T C A G C T A G T C A G C T A G T C C T G A T C G A C T G A A C T G T A G C G T A C C T A G C T A G G T C A A C T G
G C A T A T C G A G T C A G T C A G T C A G C T A C T G T C G A T C A G A C T G A C T G A T G C C G T A A C G T A C G T A C G T A C G T