Information for 3-GCTSTKAGWAAST (Motif 4)

A C T G A G T C A C G T A T C G A C G T A C G T C G T A C T A G C G A T C G T A C G T A A T C G A C G T
Reverse Opposite:
C G T A A T G C A C G T A C G T C G T A A G T C A C G T G T C A C G T A A T G C C G T A A C T G A G T C
p-value:1e-12
log p-value:-2.800e+01
Information Content per bp:1.878
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif1.07%
Number of Background Sequences with motif1.5
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets31.4 +/- 28.7bp
Average Position of motif in Background38.2 +/- 7.7bp
Strand Bias (log2 ratio + to - strand density)-2.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

POL010.1_DCE_S_III/Jaspar

Match Rank:1
Score:0.56
Offset:-1
Orientation:reverse strand
Alignment:-GCTSTKAGWAAST
NGCTN---------
 A C G T A C T G A G T C A C G T A T C G A C G T A C G T C G T A C T A G C G A T C G T A C G T A A T C G A C G T
T A C G A C T G A G T C A C G T A T C G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

PU.1(ETS)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer

Match Rank:2
Score:0.54
Offset:4
Orientation:forward strand
Alignment:GCTSTKAGWAAST-
----AGAGGAAGTG
 A C T G A G T C A C G T A T C G A C G T A C G T C G T A C T A G C G A T C G T A C G T A A T C G A C G T A C G T
A C G T A C G T A C G T A C G T C G T A T A C G T C G A A C T G A C T G C G T A C G T A T A C G A G C T T A C G

Rhox11/MA0629.1/Jaspar

Match Rank:3
Score:0.54
Offset:-5
Orientation:forward strand
Alignment:-----GCTSTKAGWAAST
AAGACGCTGTAAAGCGA-
 A C G T A C G T A C G T A C G T A C G T A C T G A G T C A C G T A T C G A C G T A C G T C G T A C T A G C G A T C G T A C G T A A T C G A C G T
C G T A T G C A C A T G T G C A G A T C C T A G T A G C C A G T C T A G G A C T C G T A G C T A G C T A C T A G T A G C T C A G G C T A A C G T

PH0157.1_Rhox11_1/Jaspar

Match Rank:4
Score:0.54
Offset:-5
Orientation:forward strand
Alignment:-----GCTSTKAGWAAST
AAGACGCTGTAAAGCGA-
 A C G T A C G T A C G T A C G T A C G T A C T G A G T C A C G T A T C G A C G T A C G T C G T A C T A G C G A T C G T A C G T A A T C G A C G T
C G T A T G C A C A T G T G C A G A T C C T A G T A G C C A G T C T A G G A C T C G T A G C T A G C T A C T A G T A G C T C A G G C T A A C G T

POL009.1_DCE_S_II/Jaspar

Match Rank:5
Score:0.54
Offset:0
Orientation:forward strand
Alignment:GCTSTKAGWAAST
GCTGTG-------
 A C T G A G T C A C G T A T C G A C G T A C G T C G T A C T A G C G A T C G T A C G T A A T C G A C G T
T A C G T A G C C A G T A T C G G A C T A T C G A C G T A C G T A C G T A C G T A C G T A C G T A C G T

STAT5(Stat)/mCD4+-Stat5-ChIP-Seq(GSE12346)/Homer

Match Rank:6
Score:0.54
Offset:-1
Orientation:forward strand
Alignment:-GCTSTKAGWAAST
NTTTCTNAGAAA--
 A C G T A C T G A G T C A C G T A T C G A C G T A C G T C G T A C T A G C G A T C G T A C G T A A T C G A C G T
C T G A A C G T A C G T A C G T A G T C G A C T C G A T C T G A A C T G C G T A C G T A T C G A A C G T A C G T

PH0169.1_Tgif1/Jaspar

Match Rank:7
Score:0.53
Offset:-5
Orientation:reverse strand
Alignment:-----GCTSTKAGWAAST
NNNCAGCTGTCAATATN-
 A C G T A C G T A C G T A C G T A C G T A C T G A G T C A C G T A T C G A C G T A C G T C G T A C T A G C G A T C G T A C G T A A T C G A C G T
G C T A T G A C A T C G A T G C T G C A A T C G G A T C A G C T A C T G C G A T A G T C C G T A G C T A C G A T T G C A G A C T G T A C A C G T

PH0158.1_Rhox11_2/Jaspar

Match Rank:8
Score:0.53
Offset:-5
Orientation:forward strand
Alignment:-----GCTSTKAGWAAST
AGGACGCTGTAAAGGGA-
 A C G T A C G T A C G T A C G T A C G T A C T G A G T C A C G T A T C G A C G T A C G T C G T A C T A G C G A T C G T A C G T A A T C G A C G T
C G T A T C A G C A T G G T C A G A T C C T A G T A G C C A G T C T A G G A C T G C T A C G T A G C T A C T A G T A C G T C A G G C T A A C G T

PH0170.1_Tgif2/Jaspar

Match Rank:9
Score:0.52
Offset:-5
Orientation:forward strand
Alignment:-----GCTSTKAGWAAST
AACTAGCTGTCAATAC--
 A C G T A C G T A C G T A C G T A C G T A C T G A G T C A C G T A T C G A C G T A C G T C G T A C T A G C G A T C G T A C G T A A T C G A C G T
G C T A C G T A A T G C A G C T C T G A A T C G G T A C A G C T C T A G C G A T A G T C C G T A G C T A C G A T T G C A T A G C A C G T A C G T

PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer

Match Rank:10
Score:0.52
Offset:-1
Orientation:forward strand
Alignment:-GCTSTKAGWAAST
GSCTGTCACTCA--
 A C G T A C T G A G T C A C G T A T C G A C G T A C G T C G T A C T A G C G A T C G T A C G T A A T C G A C G T
C T A G A T G C A T G C C G A T A C T G G A C T A T G C G C T A T G A C A G C T T A G C G C T A A C G T A C G T