Information for 2-CACAAVTCCAGGCAAA (Motif 3)

G T A C G T C A A G T C C G T A G T C A T A C G A C G T G T A C A G T C G C T A T A C G A C T G G T A C C T G A C T G A C T G A
Reverse Opposite:
G A C T A G C T A G C T A C T G A G T C A T G C C G A T A C T G A C T G G T C A A T G C A C G T A C G T T C A G C A G T A C T G
p-value:1e-12
log p-value:-2.926e+01
Information Content per bp:1.701
Number of Target Sequences with motif9.0
Percentage of Target Sequences with motif1.92%
Number of Background Sequences with motif17.8
Percentage of Background Sequences with motif0.04%
Average Position of motif in Targets44.8 +/- 24.8bp
Average Position of motif in Background55.0 +/- 27.8bp
Strand Bias (log2 ratio + to - strand density)-0.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0134.1_Hnf4a_2/Jaspar

Match Rank:1
Score:0.57
Offset:-2
Orientation:forward strand
Alignment:--CACAAVTCCAGGCAAA
GGCAAAAGTCCAATAA--
 A C G T A C G T G T A C G T C A A G T C C G T A G T C A T A C G A C G T G T A C A G T C G C T A T A C G A C T G G T A C C T G A C T G A C T G A
A C G T A C G T G A T C G T A C C G T A C T G A C T G A A C T G A C G T G T A C A G T C C T G A G T C A C G A T G T C A G C A T A C G T A C G T

PB0060.1_Smad3_1/Jaspar

Match Rank:2
Score:0.54
Offset:2
Orientation:forward strand
Alignment:CACAAVTCCAGGCAAA---
--CAAATCCAGACATCACA
 G T A C G T C A A G T C C G T A G T C A T A C G A C G T G T A C A G T C G C T A T A C G A C T G G T A C C T G A C T G A C T G A A C G T A C G T A C G T
A C G T A C G T G T A C C T G A C G T A C G T A C G A T A G T C A G T C T G C A C T A G G T C A G T A C C T G A A C G T A G T C G C T A T A C G G T C A

p53(p53)/mES-cMyc-ChIP-Seq(GSE11431)/Homer

Match Rank:3
Score:0.53
Offset:1
Orientation:forward strand
Alignment:CACAAVTCCAGGCAAA
-ACATGCCCGGGCAT-
 G T A C G T C A A G T C C G T A G T C A T A C G A C G T G T A C A G T C G C T A T A C G A C T G G T A C C T G A C T G A C T G A
A C G T C T G A T A G C G C T A C G A T A T C G A G T C G A T C G A T C C T A G T C A G T C A G G T A C G C T A C A G T A C G T

SF1(NR)/H295R-Nr5a1-ChIP-Seq(GSE44220)/Homer

Match Rank:4
Score:0.52
Offset:2
Orientation:forward strand
Alignment:CACAAVTCCAGGCAAA
--CAAGGHCANV----
 G T A C G T C A A G T C C G T A G T C A T A C G A C G T G T A C A G T C G C T A T A C G A C T G G T A C C T G A C T G A C T G A
A C G T A C G T T G A C C G T A C T G A A C T G A C T G G A C T G A T C T G C A G T A C T A C G A C G T A C G T A C G T A C G T

GFY(?)/Promoter/Homer

Match Rank:5
Score:0.50
Offset:-2
Orientation:forward strand
Alignment:--CACAAVTCCAGGCAAA
ACTACAATTCCC------
 A C G T A C G T G T A C G T C A A G T C C G T A G T C A T A C G A C G T G T A C A G T C G C T A T A C G A C T G G T A C C T G A C T G A C T G A
T G C A T A G C G A C T T G C A T G A C T G C A C G T A A G C T A G C T A G T C A G T C G T A C A C G T A C G T A C G T A C G T A C G T A C G T

ZNF354C/MA0130.1/Jaspar

Match Rank:6
Score:0.49
Offset:5
Orientation:forward strand
Alignment:CACAAVTCCAGGCAAA
-----ATCCAC-----
 G T A C G T C A A G T C C G T A G T C A T A C G A C G T G T A C A G T C G C T A T A C G A C T G G T A C C T G A C T G A C T G A
A C G T A C G T A C G T A C G T A C G T T G C A G C A T A G T C A G T C C G T A A T G C A C G T A C G T A C G T A C G T A C G T

ETS:RUNX(ETS,Runt)/Jurkat-RUNX1-ChIP-Seq(GSE17954)/Homer

Match Rank:7
Score:0.49
Offset:0
Orientation:reverse strand
Alignment:CACAAVTCCAGGCAAA
ACCACATCCTGT----
 G T A C G T C A A G T C C G T A G T C A T A C G A C G T G T A C A G T C G C T A T A C G A C T G G T A C C T G A C T G A C T G A
T G C A A G T C A G T C C G T A A G T C C G T A A C G T A G T C A G T C C A G T A T C G A G C T A C G T A C G T A C G T A C G T

PB0185.1_Tcf1_2/Jaspar

Match Rank:8
Score:0.49
Offset:1
Orientation:reverse strand
Alignment:CACAAVTCCAGGCAAA
-NNTAATCCNGNCNN-
 G T A C G T C A A G T C C G T A G T C A T A C G A C G T G T A C A G T C G C T A T A C G A C T G G T A C C T G A C T G A C T G A
A C G T G A T C G T A C G C A T T G C A G T C A G A C T G T A C A G T C T C A G A T C G C T A G A G T C T G C A C G T A A C G T

Ronin(THAP)/ES-Thap11-ChIP-Seq(GSE51522)/Homer

Match Rank:9
Score:0.49
Offset:-3
Orientation:forward strand
Alignment:---CACAAVTCCAGGCAAA-
RACTACAACTCCCAGVAKGC
 A C G T A C G T A C G T G T A C G T C A A G T C C G T A G T C A T A C G A C G T G T A C A G T C G C T A T A C G A C T G G T A C C T G A C T G A C T G A A C G T
T C A G C G T A A G T C A G C T C G T A A G T C C T G A C G T A A G T C G C A T A G T C A G T C A G T C C T G A A C T G T G C A T C G A C A T G A T C G G A T C

E2F8/MA0865.1/Jaspar

Match Rank:10
Score:0.49
Offset:4
Orientation:forward strand
Alignment:CACAAVTCCAGGCAAA
----TTTCCCGCCAAA
 G T A C G T C A A G T C C G T A G T C A T A C G A C G T G T A C A G T C G C T A T A C G A C T G G T A C C T G A C T G A C T G A
A C G T A C G T A C G T A C G T G A C T A G C T A C G T A G T C A G T C A T G C T A C G A G T C T A G C C T G A C G T A G C T A