Information for 5-GGGCCAGRCWGAK (Motif 10)

A C T G A C T G A C T G G T A C A G T C C G T A A C T G C T A G A G T C C G T A A C T G C T G A A C T G
Reverse Opposite:
T G A C A G C T A G T C C G A T A C T G A G T C G T A C C G A T A C T G A C T G A G T C A G T C A G T C
p-value:1e-10
log p-value:-2.358e+01
Information Content per bp:1.872
Number of Target Sequences with motif8.0
Percentage of Target Sequences with motif1.71%
Number of Background Sequences with motif21.8
Percentage of Background Sequences with motif0.05%
Average Position of motif in Targets40.9 +/- 18.4bp
Average Position of motif in Background40.5 +/- 27.1bp
Strand Bias (log2 ratio + to - strand density)0.7
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:1
Score:0.69
Offset:3
Orientation:reverse strand
Alignment:GGGCCAGRCWGAK
---CCAGACAG--
 A C T G A C T G A C T G G T A C A G T C C G T A A C T G C T A G A G T C C G T A A C T G C T G A A C T G
A C G T A C G T A C G T A T G C A G T C T G C A C T A G G T C A G T A C C T G A T A C G A C G T A C G T

SMAD2::SMAD3::SMAD4/MA0513.1/Jaspar

Match Rank:2
Score:0.68
Offset:-2
Orientation:reverse strand
Alignment:--GGGCCAGRCWGAK
AGGTGNCAGACAG--
 A C G T A C G T A C T G A C T G A C T G G T A C A G T C C G T A A C T G C T A G A G T C C G T A A C T G C T G A A C T G
C T G A C T A G A T C G C G A T A T C G G T C A A T G C C G T A A C T G T G C A A G T C C G T A A T C G A C G T A C G T

Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer

Match Rank:3
Score:0.66
Offset:-2
Orientation:forward strand
Alignment:--GGGCCAGRCWGAK
AGGTGHCAGACA---
 A C G T A C G T A C T G A C T G A C T G G T A C A G T C C G T A A C T G C T A G A G T C C G T A A C T G C T G A A C T G
C T G A C T A G A T C G G C A T A C T G G T A C A T G C C G T A A C T G G C T A A G T C C G T A A C G T A C G T A C G T

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:4
Score:0.63
Offset:3
Orientation:reverse strand
Alignment:GGGCCAGRCWGAK
---CCAGACRSVB
 A C T G A C T G A C T G G T A C A G T C C G T A A C T G C T A G A G T C C G T A A C T G C T G A A C T G
A C G T A C G T A C G T T A G C A G T C C G T A A C T G C G T A A G T C C T A G A T C G T A G C A T G C

PB0060.1_Smad3_1/Jaspar

Match Rank:5
Score:0.61
Offset:-2
Orientation:forward strand
Alignment:--GGGCCAGRCWGAK--
CAAATCCAGACATCACA
 A C G T A C G T A C T G A C T G A C T G G T A C A G T C C G T A A C T G C T A G A G T C C G T A A C T G C T G A A C T G A C G T A C G T
G T A C C T G A C G T A C G T A C G A T A G T C A G T C T G C A C T A G G T C A G T A C C T G A A C G T A G T C G C T A T A C G G T C A

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:6
Score:0.60
Offset:3
Orientation:reverse strand
Alignment:GGGCCAGRCWGAK
---BCAGACWA--
 A C T G A C T G A C T G G T A C A G T C C G T A A C T G C T A G A G T C C G T A A C T G C T G A A C T G
A C G T A C G T A C G T A T G C A G T C C G T A C T A G G T C A A G T C C G T A T C G A A C G T A C G T

Zfp809(Zf)/ES-Zfp809-ChIP-Seq(GSE70799)/Homer

Match Rank:7
Score:0.57
Offset:-1
Orientation:forward strand
Alignment:-GGGCCAGRCWGAK-
GGGGCTYGKCTGGGA
 A C G T A C T G A C T G A C T G G T A C A G T C C G T A A C T G C T A G A G T C C G T A A C T G C T G A A C T G A C G T
C T A G C A T G C A T G T A C G A G T C G C A T A G C T C T A G A C G T A G T C G A C T A C T G A C T G A C T G T C G A

Hand1::Tcf3/MA0092.1/Jaspar

Match Rank:8
Score:0.57
Offset:0
Orientation:reverse strand
Alignment:GGGCCAGRCWGAK
ATGCCAGACN---
 A C T G A C T G A C T G G T A C A G T C C G T A A C T G C T A G A G T C C G T A A C T G C T G A A C T G
C G T A G C A T C A T G T A G C A G T C C G T A C T A G C G T A G A T C T A G C A C G T A C G T A C G T

PB0153.1_Nr2f2_2/Jaspar

Match Rank:9
Score:0.56
Offset:-6
Orientation:forward strand
Alignment:------GGGCCAGRCWGAK
CGCGCCGGGTCACGTA---
 A C G T A C G T A C G T A C G T A C G T A C G T A C T G A C T G A C T G G T A C A G T C C G T A A C T G C T A G A G T C C G T A A C T G C T G A A C T G
T A G C A C T G T G A C A C T G A G T C A T G C C T A G A C T G A C T G A C G T A G T C C T G A T A G C A C T G A G C T G C T A A C G T A C G T A C G T

NFIX/MA0671.1/Jaspar

Match Rank:10
Score:0.56
Offset:-1
Orientation:forward strand
Alignment:-GGGCCAGRCWGAK
CGTGCCAAG-----
 A C G T A C T G A C T G A C T G G T A C A G T C C G T A A C T G C T A G A G T C C G T A A C T G C T G A A C T G
T A G C C A T G G C A T A C T G A T G C A G T C T G C A C T G A T A C G A C G T A C G T A C G T A C G T A C G T