Information for 20-CCAACCCAAC (Motif 28)

A G T C A G T C C G T A C G T A A G T C A G T C A G T C C G T A C G T A A G T C
Reverse Opposite:
A C T G A C G T A C G T A C T G A C T G A C T G A C G T A C G T A C T G A C T G
p-value:1e-5
log p-value:-1.250e+01
Information Content per bp:1.530
Number of Target Sequences with motif3.0
Percentage of Target Sequences with motif0.47%
Number of Background Sequences with motif2.7
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets31.3 +/- 12.6bp
Average Position of motif in Background36.5 +/- 15.3bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0167.1_Sox13_2/Jaspar

Match Rank:1
Score:0.68
Offset:-5
Orientation:reverse strand
Alignment:-----CCAACCCAAC--
ANNTNCCCACCCANNAC
 A C G T A C G T A C G T A C G T A C G T A G T C A G T C C G T A C G T A A G T C A G T C A G T C C G T A C G T A A G T C A C G T A C G T
G T C A C G T A C G A T C G A T C G T A G T A C G T A C T A G C C G T A G A T C G T A C G T A C C T G A C T G A G A C T G C T A G A T C

RREB1/MA0073.1/Jaspar

Match Rank:2
Score:0.64
Offset:-2
Orientation:forward strand
Alignment:--CCAACCCAAC--------
CCCCAAACCACCCCCCCCCA
 A C G T A C G T A G T C A G T C C G T A C G T A A G T C A G T C A G T C C G T A C G T A A G T C A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
G T A C G T A C G T A C A G T C G T C A G T C A G T C A G T A C A G T C C G T A G T A C G T A C G T A C T G A C G T A C G T A C G T A C G T A C T A G C T G A C

PB0098.1_Zfp410_1/Jaspar

Match Rank:3
Score:0.62
Offset:-4
Orientation:reverse strand
Alignment:----CCAACCCAAC---
NNNTCCATCCCATAANN
 A C G T A C G T A C G T A C G T A G T C A G T C C G T A C G T A A G T C A G T C A G T C C G T A C G T A A G T C A C G T A C G T A C G T
A C G T G C A T G T C A A C G T T G A C G A T C G C T A A G C T G A T C G A T C G A T C C G T A C A G T G C T A G T C A A G C T G C T A

PB0029.1_Hic1_1/Jaspar

Match Rank:4
Score:0.62
Offset:-6
Orientation:forward strand
Alignment:------CCAACCCAAC
ACTATGCCAACCTACC
 A C G T A C G T A C G T A C G T A C G T A C G T A G T C A G T C C G T A C G T A A G T C A G T C A G T C C G T A C G T A A G T C
C G T A A G T C A C G T C T G A A C G T C T A G A T G C A G T C G T C A T G C A A G T C A G T C G C A T C T G A G A T C G A T C

PB0110.1_Bcl6b_2/Jaspar

Match Rank:5
Score:0.59
Offset:-4
Orientation:forward strand
Alignment:----CCAACCCAAC--
ATCCCCGCCCCTAAAA
 A C G T A C G T A C G T A C G T A G T C A G T C C G T A C G T A A G T C A G T C A G T C C G T A C G T A A G T C A C G T A C G T
G T C A A C G T A T G C A T G C A G T C G A T C C T A G G A T C T G A C A T G C A G T C C G A T G C T A G T C A G C T A T G C A

POL001.1_MTE/Jaspar

Match Rank:6
Score:0.57
Offset:-3
Orientation:forward strand
Alignment:---CCAACCCAAC------
TTTCGAGCGGAACGGTCGC
 A C G T A C G T A C G T A G T C A G T C C G T A C G T A A G T C A G T C A G T C C G T A C G T A A G T C A C G T A C G T A C G T A C G T A C G T A C G T
A C G T G A C T A G C T A G T C C T A G C G T A C T A G A G T C A T C G T A C G C G T A C T A G A G T C A C T G A T C G C G A T G A T C T A C G A G C T

Hic1/MA0739.1/Jaspar

Match Rank:7
Score:0.57
Offset:-3
Orientation:forward strand
Alignment:---CCAACCCAAC
ATGCCAACC----
 A C G T A C G T A C G T A G T C A G T C C G T A C G T A A G T C A G T C A G T C C G T A C G T A A G T C
T C G A A G C T T C A G T A G C G T A C G T C A T C G A A T G C A G T C A C G T A C G T A C G T A C G T

NFIC/MA0161.1/Jaspar

Match Rank:8
Score:0.56
Offset:-2
Orientation:reverse strand
Alignment:--CCAACCCAAC
TGCCAA------
 A C G T A C G T A G T C A G T C C G T A C G T A A G T C A G T C A G T C C G T A C G T A A G T C
G C A T C A T G G A T C A G T C G T C A C T G A A C G T A C G T A C G T A C G T A C G T A C G T

PB0107.1_Ascl2_2/Jaspar

Match Rank:9
Score:0.56
Offset:-5
Orientation:forward strand
Alignment:-----CCAACCCAAC-
CTATCCCCGCCCTATT
 A C G T A C G T A C G T A C G T A C G T A G T C A G T C C G T A C G T A A G T C A G T C A G T C C G T A C G T A A G T C A C G T
A T G C G A C T T G C A C G A T G T A C T A G C G T A C T G A C C T A G A G T C G A T C G A T C A G C T C T G A A C G T G A C T

Klf4(Zf)/mES-Klf4-ChIP-Seq(GSE11431)/Homer

Match Rank:10
Score:0.55
Offset:-2
Orientation:forward strand
Alignment:--CCAACCCAAC
GCCACACCCA--
 A C G T A C G T A G T C A G T C C G T A C G T A A G T C A G T C A G T C C G T A C G T A A G T C
C T A G G T A C A G T C T G C A A G T C C T G A A G T C A G T C A G T C G C T A A C G T A C G T