Information for 12-GGATTAACAC (Motif 18)

A C T G T A C G C G T A A C G T C G A T C T G A G T C A G T A C C G T A A G T C
Reverse Opposite:
T C A G C G A T A C T G A C G T G A C T C G T A C G T A A C G T A T G C A G T C
p-value:1e-9
log p-value:-2.073e+01
Information Content per bp:1.848
Number of Target Sequences with motif12.0
Percentage of Target Sequences with motif1.87%
Number of Background Sequences with motif72.8
Percentage of Background Sequences with motif0.16%
Average Position of motif in Targets52.8 +/- 21.9bp
Average Position of motif in Background49.2 +/- 31.4bp
Strand Bias (log2 ratio + to - strand density)0.5
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0137.1_Pitx1/Jaspar

Match Rank:1
Score:0.82
Offset:-6
Orientation:forward strand
Alignment:------GGATTAACAC-
TTAGAGGGATTAACAAT
 A C G T A C G T A C G T A C G T A C G T A C G T A C T G T A C G C G T A A C G T C G A T C T G A G T C A G T A C C G T A A G T C A C G T
G A C T A C G T T C G A C T A G C T G A T C A G C T A G C A T G G T C A A C G T G A C T C G T A C T G A G T A C C T G A G T C A G C A T

PH0123.1_Obox3/Jaspar

Match Rank:2
Score:0.80
Offset:-6
Orientation:forward strand
Alignment:------GGATTAACAC-
TGAGGGGGATTAACTAT
 A C G T A C G T A C G T A C G T A C G T A C G T A C T G T A C G C G T A A C G T C G A T C T G A G T C A G T A C C G T A A G T C A C G T
G C A T A T C G T C G A T A C G C T A G C T A G C T A G C A T G G C T A A C G T G A C T C G T A C G T A G T A C C G A T G T C A G A C T

Otx2(Homeobox)/EpiLC-Otx2-ChIP-Seq(GSE56098)/Homer

Match Rank:3
Score:0.79
Offset:-2
Orientation:reverse strand
Alignment:--GGATTAACAC
VRGGATTARN--
 A C G T A C G T A C T G T A C G C G T A A C G T C G A T C T G A G T C A G T A C C G T A A G T C
T C G A C T A G C T A G C T A G G T C A A C G T C G A T C G T A C T G A T A G C A C G T A C G T

Pitx1/MA0682.1/Jaspar

Match Rank:4
Score:0.79
Offset:-1
Orientation:reverse strand
Alignment:-GGATTAACAC
GGGATTAA---
 A C G T A C T G T A C G C G T A A C G T C G A T C T G A G T C A G T A C C G T A A G T C
C A T G C T A G C T A G G T C A C G A T A G C T C G T A C T G A A C G T A C G T A C G T

OTX2/MA0712.1/Jaspar

Match Rank:5
Score:0.78
Offset:-1
Orientation:reverse strand
Alignment:-GGATTAACAC
NGGATTAA---
 A C G T A C T G T A C G C G T A A C G T C G A T C T G A G T C A G T A C C G T A A G T C
T G C A T C A G C T A G G T C A A C G T G C A T C G T A C T G A A C G T A C G T A C G T

PITX3/MA0714.1/Jaspar

Match Rank:6
Score:0.78
Offset:-1
Orientation:reverse strand
Alignment:-GGATTAACAC
GGGATTANN--
 A C G T A C T G T A C G C G T A A C G T C G A T C T G A G T C A G T A C C G T A A G T C
C T A G T C A G C A T G G T C A A G C T G A C T C G T A C T G A A T C G A C G T A C G T

CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer

Match Rank:7
Score:0.77
Offset:0
Orientation:reverse strand
Alignment:GGATTAACAC
GGATTAGC--
 A C T G T A C G C G T A A C G T C G A T C T G A G T C A G T A C C G T A A G T C
T C A G T A C G T G C A C A G T G C A T C G T A C T A G T A G C A C G T A C G T

GSC/MA0648.1/Jaspar

Match Rank:8
Score:0.76
Offset:-2
Orientation:reverse strand
Alignment:--GGATTAACAC
NNGGATTAGN--
 A C G T A C G T A C T G T A C G C G T A A C G T C G A T C T G A G T C A G T A C C G T A A G T C
C T A G T A C G T C A G T C A G T G C A A C G T G A C T C T G A C T A G A T G C A C G T A C G T

OTX1/MA0711.1/Jaspar

Match Rank:9
Score:0.76
Offset:-1
Orientation:reverse strand
Alignment:-GGATTAACAC
CGGATTAN---
 A C G T A C T G T A C G C G T A A C G T C G A T C T G A G T C A G T A C C G T A A G T C
T A G C T A C G A T C G G T C A A C G T G C A T C G T A C T G A A C G T A C G T A C G T

PH0121.1_Obox1/Jaspar

Match Rank:10
Score:0.76
Offset:-6
Orientation:forward strand
Alignment:------GGATTAACAC-
TTAAGGGGATTAACTAC
 A C G T A C G T A C G T A C G T A C G T A C G T A C T G T A C G C G T A A C G T C G A T C T G A G T C A G T A C C G T A A G T C A C G T
C A G T C G A T T C G A T C G A C T A G C T A G C T A G A C T G G T C A A G C T G A C T C G T A C G T A G T A C C G A T G C T A A G T C