Information for 2-WAAACCTGATYAGAYA (Motif 3)

C G T A G C T A C T G A T C G A G T A C A G T C C G A T C A T G C G T A A G C T A G C T C G T A C A T G T G C A A G C T G C T A
Reverse Opposite:
C G A T T C A G A C G T G A T C G C A T T C G A C T G A C G A T G T A C G C T A C T A G C A T G A G C T G A C T C G A T G C A T
p-value:1e-15
log p-value:-3.601e+01
Information Content per bp:1.573
Number of Target Sequences with motif31.0
Percentage of Target Sequences with motif4.99%
Number of Background Sequences with motif335.1
Percentage of Background Sequences with motif0.73%
Average Position of motif in Targets42.2 +/- 25.4bp
Average Position of motif in Background47.1 +/- 32.1bp
Strand Bias (log2 ratio + to - strand density)-1.2
Multiplicity (# of sites on avg that occur together)1.11
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0094.1_Lhx4/Jaspar

Match Rank:1
Score:0.65
Offset:0
Orientation:reverse strand
Alignment:WAAACCTGATYAGAYA-
CAAAGCTAATTAGNTTN
 C G T A G C T A C T G A T C G A G T A C A G T C C G A T C A T G C G T A A G C T A G C T C G T A C A T G T G C A A G C T G C T A A C G T
G A T C T G C A G C T A T G C A T A C G A T G C G A C T T C G A C T G A A G C T A G C T C T G A A T C G A G C T G C A T C A G T G T C A

PB0022.1_Gata5_1/Jaspar

Match Rank:2
Score:0.62
Offset:1
Orientation:forward strand
Alignment:WAAACCTGATYAGAYA--
-TAAACTGATAAGAAGAT
 C G T A G C T A C T G A T C G A G T A C A G T C C G A T C A T G C G T A A G C T A G C T C G T A C A T G T G C A A G C T G C T A A C G T A C G T
A C G T G C A T C G T A C G T A C T G A A G T C G C A T A C T G C G T A C G A T G C T A C G T A T A C G T C G A T C G A C A T G C G T A C A G T

CArG(MADS)/PUER-Srf-ChIP-Seq(Sullivan_et_al.)/Homer

Match Rank:3
Score:0.60
Offset:4
Orientation:forward strand
Alignment:WAAACCTGATYAGAYA
----CCATATATGGNA
 C G T A G C T A C T G A T C G A G T A C A G T C C G A T C A T G C G T A A G C T A G C T C G T A C A T G T G C A A G C T G C T A
A C G T A C G T A C G T A C G T A T G C A G T C G C T A C G A T C G T A G C A T G C T A C G A T C T A G C A T G T G A C G T C A

PH0155.1_Prrx2/Jaspar

Match Rank:4
Score:0.60
Offset:1
Orientation:forward strand
Alignment:WAAACCTGATYAGAYA--
-AAAGCTAATTAGCGAAA
 C G T A G C T A C T G A T C G A G T A C A G T C C G A T C A T G C G T A A G C T A G C T C G T A C A T G T G C A A G C T G C T A A C G T A C G T
A C G T C G T A T G C A G T C A T C A G G A T C A G C T C T G A C G T A G A C T A G C T C T G A C T A G A G T C C A T G C T G A C G T A C T G A

TFCP2/MA0145.3/Jaspar

Match Rank:5
Score:0.59
Offset:1
Orientation:forward strand
Alignment:WAAACCTGATYAGAYA
-AAACCGGTTT-----
 C G T A G C T A C T G A T C G A G T A C A G T C C G A T C A T G C G T A A G C T A G C T C G T A C A T G T G C A A G C T G C T A
A C G T T C G A C G T A C G T A T A G C G A T C C T A G A T C G G C A T G A C T G A C T A C G T A C G T A C G T A C G T A C G T

PH0098.1_Lhx8/Jaspar

Match Rank:6
Score:0.59
Offset:1
Orientation:forward strand
Alignment:WAAACCTGATYAGAYA--
-ACCCCTAATTAGCGGTG
 C G T A G C T A C T G A T C G A G T A C A G T C C G A T C A T G C G T A A G C T A G C T C G T A C A T G T G C A A G C T G C T A A C G T A C G T
A C G T G C T A T G A C T G A C T G A C T G A C G A C T T C G A C T G A A G C T A G C T C T G A A C T G A G T C C A T G C A T G A C G T C T A G

PB0078.1_Srf_1/Jaspar

Match Rank:7
Score:0.59
Offset:2
Orientation:forward strand
Alignment:WAAACCTGATYAGAYA
--TTCCATATATGGAA
 C G T A G C T A C T G A T C G A G T A C A G T C C G A T C A T G C G T A A G C T A G C T C G T A C A T G T G C A A G C T G C T A
A C G T A C G T G C A T C G A T G T A C A G T C C G T A C G A T C G T A G C A T C G T A G C A T C T A G C A T G G C A T G T C A

PH0092.1_Lhx2/Jaspar

Match Rank:8
Score:0.59
Offset:1
Orientation:forward strand
Alignment:WAAACCTGATYAGAYA--
-TAAACTAATTAGTGAAC
 C G T A G C T A C T G A T C G A G T A C A G T C C G A T C A T G C G T A A G C T A G C T C G T A C A T G T G C A A G C T G C T A A C G T A C G T
A C G T C G A T T G C A G T C A T C G A G A T C G A C T G T C A C T G A A G C T A C G T C T G A C T A G A G C T C A T G G T C A G T C A A T G C

PH0058.1_Hoxb3/Jaspar

Match Rank:9
Score:0.59
Offset:1
Orientation:forward strand
Alignment:WAAACCTGATYAGAYA--
-TGAGCTAATTAGTTGGA
 C G T A G C T A C T G A T C G A G T A C A G T C C G A T C A T G C G T A A G C T A G C T C G T A C A T G T G C A A G C T G C T A A C G T A C G T
A C G T C G A T T C A G T G C A T A C G A T G C G A C T G T C A C G T A C G A T A C G T C T G A T A C G A G C T C A G T T C A G C T A G C G T A

GRHL1/MA0647.1/Jaspar

Match Rank:10
Score:0.58
Offset:0
Orientation:forward strand
Alignment:WAAACCTGATYAGAYA
AAAACCGGTTTT----
 C G T A G C T A C T G A T C G A G T A C A G T C C G A T C A T G C G T A A G C T A G C T C G T A C A T G T G C A A G C T G C T A
G T C A C G T A C T G A C G T A A G T C G T A C C T A G A T C G G C A T G A C T G C A T C G A T A C G T A C G T A C G T A C G T