Information for 18-GCCCATTAGG (Motif 26)

A C T G A G T C A G T C A G T C C G T A A C G T A C G T C G T A A C T G A C T G
Reverse Opposite:
A G T C A G T C A C G T C G T A C G T A A C G T A C T G A C T G A C T G A G T C
p-value:1e-5
log p-value:-1.228e+01
Information Content per bp:1.530
Number of Target Sequences with motif3.0
Percentage of Target Sequences with motif0.42%
Number of Background Sequences with motif2.6
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets38.7 +/- 18.8bp
Average Position of motif in Background54.5 +/- 23.8bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer

Match Rank:1
Score:0.73
Offset:1
Orientation:reverse strand
Alignment:GCCCATTAGG
-BCMATTAG-
 A C T G A G T C A G T C A G T C C G T A A C G T A C G T C G T A A C T G A C T G
A C G T A C T G A G T C G T C A G T C A A C G T A G C T C G T A T C A G A C G T

BSX/MA0876.1/Jaspar

Match Rank:2
Score:0.71
Offset:1
Orientation:forward strand
Alignment:GCCCATTAGG
-CCAATTAA-
 A C T G A G T C A G T C A G T C C G T A A C G T A C G T C G T A A C T G A C T G
A C G T T A G C G A T C T G C A T C G A A C G T C G A T C G T A T C G A A C G T

BARX1/MA0875.1/Jaspar

Match Rank:3
Score:0.71
Offset:1
Orientation:forward strand
Alignment:GCCCATTAGG
-GCAATTAG-
 A C T G A G T C A G T C A G T C C G T A A C G T A C G T C G T A A C T G A C T G
A C G T T C A G G A T C T G C A T G C A A C G T A C G T C G T A T C A G A C G T

Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:4
Score:0.71
Offset:0
Orientation:forward strand
Alignment:GCCCATTAGG
GGCCATTAAC
 A C T G A G T C A G T C A G T C C G T A A C G T A C G T C G T A A C T G A C T G
C T A G T A C G G A T C G T A C G C T A A G C T A G C T G T C A T C G A T A G C

VENTX/MA0724.1/Jaspar

Match Rank:5
Score:0.68
Offset:0
Orientation:forward strand
Alignment:GCCCATTAGG
ACCGATTAG-
 A C T G A G T C A G T C A G T C C G T A A C G T A C G T C G T A A C T G A C T G
C G T A T G A C G A T C T C A G G T C A A C G T A C G T C G T A C T A G A C G T

Barhl1/MA0877.1/Jaspar

Match Rank:6
Score:0.67
Offset:0
Orientation:reverse strand
Alignment:GCCCATTAGG
NNCAATTANN
 A C T G A G T C A G T C A G T C C G T A A C G T A C G T C G T A A C T G A C T G
T C G A T A C G G A T C T C G A G C T A G A C T G C A T C G T A C T A G T A G C

PH0098.1_Lhx8/Jaspar

Match Rank:7
Score:0.66
Offset:-4
Orientation:reverse strand
Alignment:----GCCCATTAGG---
CACCGCTAATTAGNNGN
 A C G T A C G T A C G T A C G T A C T G A G T C A G T C A G T C C G T A A C G T A C G T C G T A A C T G A C T G A C G T A C G T A C G T
G A T C T G C A G T A C G T A C T C A G T G A C G A C T T C G A C T G A A G C T A G C T C T G A A C T G A C T G A C T G A C T G C G A T

EN2/MA0642.1/Jaspar

Match Rank:8
Score:0.66
Offset:0
Orientation:forward strand
Alignment:GCCCATTAGG
CCCAATTAGC
 A C T G A G T C A G T C A G T C C G T A A C G T A C G T C G T A A C T G A C T G
T A G C A T G C A G T C T G C A T G C A A C G T A G C T C T G A T A C G A T G C

HOXB3/MA0903.1/Jaspar

Match Rank:9
Score:0.66
Offset:0
Orientation:forward strand
Alignment:GCCCATTAGG
ACTAATTAGC
 A C T G A G T C A G T C A G T C C G T A A C G T A C G T C G T A A C T G A C T G
C T G A T A G C G A C T T G C A T C G A A G C T G A C T G C T A T C A G T G A C

LBX2/MA0699.1/Jaspar

Match Rank:10
Score:0.65
Offset:0
Orientation:forward strand
Alignment:GCCCATTAGG
GCCAATTAGC
 A C T G A G T C A G T C A G T C C G T A A C G T A C G T C G T A A C T G A C T G
T C A G A G T C G A T C T G C A T G C A A C G T A C G T C G T A C T A G T A G C