Information for 15-CATTRTCHCY (Motif 23)

A G T C C G T A A C G T A C G T C T G A C G A T A G T C G T A C G A T C G A C T
Reverse Opposite:
C T G A C T A G C A T G C T A G C G T A A G C T C G T A T G C A A C G T A C T G
p-value:1e-7
log p-value:-1.631e+01
Information Content per bp:1.725
Number of Target Sequences with motif41.0
Percentage of Target Sequences with motif5.69%
Number of Background Sequences with motif1047.7
Percentage of Background Sequences with motif2.22%
Average Position of motif in Targets60.1 +/- 31.4bp
Average Position of motif in Background50.6 +/- 31.2bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Sox17/MA0078.1/Jaspar

Match Rank:1
Score:0.74
Offset:-2
Orientation:forward strand
Alignment:--CATTRTCHCY
CTCATTGTC---
 A C G T A C G T A G T C C G T A A C G T A C G T C T G A C G A T A G T C G T A C G A T C G A C T
G A C T G A C T G A T C C G T A A G C T A C G T A C T G A C G T A T G C A C G T A C G T A C G T

Sox6/MA0515.1/Jaspar

Match Rank:2
Score:0.73
Offset:-1
Orientation:forward strand
Alignment:-CATTRTCHCY
CCATTGTTTT-
 A C G T A G T C C G T A A C G T A C G T C T G A C G A T A G T C G T A C G A T C G A C T
A G T C A G T C C G T A A C G T A C G T A C T G A C G T A G C T G A C T A G C T A C G T

Sox17(HMG)/Endoderm-Sox17-ChIP-Seq(GSE61475)/Homer

Match Rank:3
Score:0.71
Offset:-1
Orientation:forward strand
Alignment:-CATTRTCHCY
CCATTGTTYB-
 A C G T A G T C C G T A A C G T A C G T C T G A C G A T A G T C G T A C G A T C G A C T
A T G C G A T C C G T A A G C T C A G T A T C G G C A T A G C T G A C T A C T G A C G T

Nkx6.1(Homeobox)/Islet-Nkx6.1-ChIP-Seq(GSE40975)/Homer

Match Rank:4
Score:0.70
Offset:-1
Orientation:reverse strand
Alignment:-CATTRTCHCY
YCATTAMC---
 A C G T A G T C C G T A A C G T A C G T C T G A C G A T A G T C G T A C G A T C G A C T
A G C T T G A C C G T A A C G T A C G T C G T A G T C A T G A C A C G T A C G T A C G T

Sox15(HMG)/CPA-Sox15-ChIP-Seq(GSE62909)/Homer

Match Rank:5
Score:0.69
Offset:-2
Orientation:reverse strand
Alignment:--CATTRTCHCY
NCCATTGTTY--
 A C G T A C G T A G T C C G T A A C G T A C G T C T G A C G A T A G T C G T A C G A T C G A C T
C T A G A G T C G A T C G C T A C G A T A C G T A T C G A C G T A G C T G A C T A C G T A C G T

Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer

Match Rank:6
Score:0.69
Offset:-1
Orientation:forward strand
Alignment:-CATTRTCHCY
CCWTTGTYYB-
 A C G T A G T C C G T A A C G T A C G T C T G A C G A T A G T C G T A C G A T C G A C T
A T G C A G T C G C A T A G C T A C G T T C A G C G A T A G C T G A T C A T C G A C G T

PB0070.1_Sox30_1/Jaspar

Match Rank:7
Score:0.68
Offset:-5
Orientation:reverse strand
Alignment:-----CATTRTCHCY-
ANNTCCATTGTTCNNN
 A C G T A C G T A C G T A C G T A C G T A G T C C G T A A C G T A C G T C T G A C G A T A G T C G T A C G A T C G A C T A C G T
C T G A C T G A C A G T C G A T A G T C G T A C G C T A A G C T C A G T T C A G C G A T A G C T T A G C G C T A C G A T G A C T

SOX10/MA0442.1/Jaspar

Match Rank:8
Score:0.67
Offset:0
Orientation:forward strand
Alignment:CATTRTCHCY
CTTTGT----
 A G T C C G T A A C G T A C G T C T G A C G A T A G T C G T A C G A T C G A C T
A G T C C G A T A C G T A C G T A T C G A C G T A C G T A C G T A C G T A C G T

Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer

Match Rank:9
Score:0.66
Offset:-2
Orientation:forward strand
Alignment:--CATTRTCHCY
NCCATTGTTC--
 A C G T A C G T A G T C C G T A A C G T A C G T C T G A C G A T A G T C G T A C G A T C G A C T
A T G C A G T C G A T C C G T A A C G T A C G T A C T G A C G T A G C T G A T C A C G T A C G T

POL002.1_INR/Jaspar

Match Rank:10
Score:0.66
Offset:-1
Orientation:forward strand
Alignment:-CATTRTCHCY
TCAGTCTT---
 A C G T A G T C C G T A A C G T A C G T C T G A C G A T A G T C G T A C G A T C G A C T
C A G T A G T C C G T A A T C G G A C T G A T C A G C T A G C T A C G T A C G T A C G T