Information for 4-ATVTTTAAATATTBAG (Motif 4)

G C T A A G C T T G A C C G A T C G A T A G C T G T C A C G T A C G T A A C G T C G T A A C G T A C G T A C G T C G T A A T C G
Reverse Opposite:
A T G C A C G T T C G A C G T A C G T A A C G T G T C A A C G T A C G T A C G T T C G A C G T A C G T A A C T G C T G A C G A T
p-value:1e-14
log p-value:-3.375e+01
Information Content per bp:1.794
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif1.08%
Number of Background Sequences with motif3.0
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets57.7 +/- 18.0bp
Average Position of motif in Background38.3 +/- 17.6bp
Strand Bias (log2 ratio + to - strand density)2.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Arid5a/MA0602.1/Jaspar

Match Rank:1
Score:0.73
Offset:1
Orientation:reverse strand
Alignment:ATVTTTAAATATTBAG
-NNTNNCAATATTAG-
 G C T A A G C T T G A C C G A T C G A T A G C T G T C A C G T A C G T A A C G T C G T A A C G T A C G T A C G T C G T A A T C G
A C G T C G A T G C A T G A C T G C T A A C T G G A T C C T G A C G T A C G A T G C T A G C A T G A C T C T G A A T C G A C G T

PB0002.1_Arid5a_1/Jaspar

Match Rank:2
Score:0.73
Offset:1
Orientation:reverse strand
Alignment:ATVTTTAAATATTBAG
-NNTNNCAATATTAG-
 G C T A A G C T T G A C C G A T C G A T A G C T G T C A C G T A C G T A A C G T C G T A A C G T A C G T A C G T C G T A A T C G
A C G T C G A T G C A T G A C T G C T A A C T G G A T C C T G A C G T A C G A T G C T A G C A T G A C T C T G A A T C G A C G T

POU4F1/MA0790.1/Jaspar

Match Rank:3
Score:0.70
Offset:2
Orientation:reverse strand
Alignment:ATVTTTAAATATTBAG
--CATTAATTATTCAT
 G C T A A G C T T G A C C G A T C G A T A G C T G T C A C G T A C G T A A C G T C G T A A C G T A C G T A C G T C G T A A T C G
A C G T A C G T G T A C C T G A A G C T G C A T G C T A G C T A G C A T G C A T C G T A C G A T C A G T G A T C C T G A A G C T

POU4F3/MA0791.1/Jaspar

Match Rank:4
Score:0.69
Offset:0
Orientation:reverse strand
Alignment:ATVTTTAAATATTBAG
CTCATTAATTATGCAT
 G C T A A G C T T G A C C G A T C G A T A G C T G T C A C G T A C G T A A C G T C G T A A C G T A C G T A C G T C G T A A T C G
A G T C C A G T G T A C C T G A G A C T G C A T G C T A G C T A G C A T G C A T G C T A C G A T C A T G G A T C T C G A G A C T

POU4F2/MA0683.1/Jaspar

Match Rank:5
Score:0.67
Offset:0
Orientation:reverse strand
Alignment:ATVTTTAAATATTBAG
CTCATTAATTATGCAT
 G C T A A G C T T G A C C G A T C G A T A G C T G T C A C G T A C G T A A C G T C G T A A C G T A C G T A C G T C G T A A T C G
A G T C G A C T T G A C T G C A A G C T G A C T C G T A C G T A C G A T G C A T C G T A C G A T C A T G G A T C C T G A G A C T

Hnf1(Homeobox)/Liver-Foxa2-Chip-Seq(GSE25694)/Homer

Match Rank:6
Score:0.66
Offset:2
Orientation:forward strand
Alignment:ATVTTTAAATATTBAG
--GGTTAAACATTAA-
 G C T A A G C T T G A C C G A T C G A T A G C T G T C A C G T A C G T A A C G T C G T A A C G T A C G T A C G T C G T A A T C G
A C G T A C G T C T A G C T A G G C A T C G A T C T G A G T C A G C T A A T G C C G T A C A G T G A C T C G T A T G C A A C G T

Brn2(POU,Homeobox)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer

Match Rank:7
Score:0.63
Offset:6
Orientation:reverse strand
Alignment:ATVTTTAAATATTBAG
------GAATATTCAT
 G C T A A G C T T G A C C G A T C G A T A G C T G T C A C G T A C G T A A C G T C G T A A C G T A C G T A C G T C G T A A T C G
A C G T A C G T A C G T A C G T A C G T A C G T T C A G G T C A C G T A A G C T C G T A G A C T C A G T A T G C T C G A C G A T

FOXB1/MA0845.1/Jaspar

Match Rank:8
Score:0.62
Offset:1
Orientation:forward strand
Alignment:ATVTTTAAATATTBAG
-TATGTAAATAT----
 G C T A A G C T T G A C C G A T C G A T A G C T G T C A C G T A C G T A A C G T C G T A A C G T A C G T A C G T C G T A A T C G
A C G T G C A T C T G A C G A T C T A G G A C T T G C A G C T A C G T A A G C T C T G A G C A T A C G T A C G T A C G T A C G T

PH0038.1_Hlx/Jaspar

Match Rank:9
Score:0.61
Offset:-1
Orientation:reverse strand
Alignment:-ATVTTTAAATATTBAG
TGTAATTAATTATGG--
 A C G T G C T A A G C T T G A C C G A T C G A T A G C T G T C A C G T A C G T A A C G T C G T A A C G T A C G T A C G T C G T A A T C G
C A G T C T A G G A C T G C T A C G T A G A C T G A C T C G T A C T G A G C A T C G A T C T G A C A G T C A T G C A T G A C G T A C G T

HNF1b(Homeobox)/PDAC-HNF1B-ChIP-Seq(GSE64557)/Homer

Match Rank:10
Score:0.61
Offset:3
Orientation:forward strand
Alignment:ATVTTTAAATATTBAG
---GTTAATNATTAA-
 G C T A A G C T T G A C C G A T C G A T A G C T G T C A C G T A C G T A A C G T C G T A A C G T A C G T A C G T C G T A A T C G
A C G T A C G T A C G T C T A G A C G T G C A T T C G A G T C A G C A T A T C G C G T A C A G T A G C T C T G A T G C A A C G T