Information for 5-GGCTTAATCC (Motif 3)

C T A G T A C G A T G C C G A T G A C T T C G A C T G A C G A T T A G C G T A C
Reverse Opposite:
A C T G A T C G G C T A G A C T A G C T C T G A C G T A T A C G A T G C G A T C
p-value:1e-17
log p-value:-3.923e+01
Information Content per bp:1.681
Number of Target Sequences with motif52.0
Percentage of Target Sequences with motif8.01%
Number of Background Sequences with motif894.9
Percentage of Background Sequences with motif1.89%
Average Position of motif in Targets45.2 +/- 23.7bp
Average Position of motif in Background50.1 +/- 31.7bp
Strand Bias (log2 ratio + to - strand density)-0.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PITX3/MA0714.1/Jaspar

Match Rank:1
Score:0.80
Offset:2
Orientation:forward strand
Alignment:GGCTTAATCC-
--CTTAATCCC
 C T A G T A C G A T G C C G A T G A C T T C G A C T G A C G A T T A G C G T A C A C G T
A C G T A C G T T A G C G A C T G C A T C T G A C T G A C A G T G T A C A G T C G A T C

Pitx1/MA0682.1/Jaspar

Match Rank:2
Score:0.80
Offset:3
Orientation:forward strand
Alignment:GGCTTAATCC-
---TTAATCCC
 C T A G T A C G A T G C C G A T G A C T T C G A C T G A C G A T T A G C G T A C A C G T
A C G T A C G T A C G T G A C T G C A T T C G A C G T A C A G T G A T C G A T C G T A C

OTX2/MA0712.1/Jaspar

Match Rank:3
Score:0.80
Offset:3
Orientation:forward strand
Alignment:GGCTTAATCC-
---TTAATCCT
 C T A G T A C G A T G C C G A T G A C T T C G A C T G A C G A T T A G C G T A C A C G T
A C G T A C G T A C G T G A C T G C A T C G T A C G T A C A G T G A T C A G T C A C G T

Otx2(Homeobox)/EpiLC-Otx2-ChIP-Seq(GSE56098)/Homer

Match Rank:4
Score:0.79
Offset:2
Orientation:forward strand
Alignment:GGCTTAATCC--
--NYTAATCCYB
 C T A G T A C G A T G C C G A T G A C T T C G A C T G A C G A T T A G C G T A C A C G T A C G T
A C G T A C G T A T C G G A C T C G A T C G T A C G T A C A G T G A T C G A T C G A T C A G C T

Dmbx1/MA0883.1/Jaspar

Match Rank:5
Score:0.77
Offset:-1
Orientation:reverse strand
Alignment:-GGCTTAATCC------
NNNATTAATCCGNTTNA
 A C G T C T A G T A C G A T G C C G A T G A C T T C G A C T G A C G A T T A G C G T A C A C G T A C G T A C G T A C G T A C G T A C G T
G C A T C G A T T A G C T G C A G A C T C G A T C G T A C G T A A C G T A T G C A G T C A C T G C A T G G C A T G A C T G A T C C G T A

PH0025.1_Dmbx1/Jaspar

Match Rank:6
Score:0.77
Offset:-1
Orientation:reverse strand
Alignment:-GGCTTAATCC------
NNNATTAATCCGNTTNA
 A C G T C T A G T A C G A T G C C G A T G A C T T C G A C T G A C G A T T A G C G T A C A C G T A C G T A C G T A C G T A C G T A C G T
G C A T C G A T T A G C T G C A G A C T C G A T C G T A C G T A A C G T A T G C A G T C A C T G C A T G G C A T G A C T G A T C C G T A

OTX1/MA0711.1/Jaspar

Match Rank:7
Score:0.77
Offset:3
Orientation:forward strand
Alignment:GGCTTAATCC-
---TTAATCCG
 C T A G T A C G A T G C C G A T G A C T T C G A C T G A C G A T T A G C G T A C A C G T
A C G T A C G T A C G T G A C T G C A T C G T A C G T A C A G T T A G C A T G C A T C G

GSC2/MA0891.1/Jaspar

Match Rank:8
Score:0.76
Offset:2
Orientation:forward strand
Alignment:GGCTTAATCC--
--CCTAATCCGC
 C T A G T A C G A T G C C G A T G A C T T C G A C T G A C G A T T A G C G T A C A C G T A C G T
A C G T A C G T T G A C G A T C C G A T G C T A G C T A A C G T G T A C A G T C A T C G G A T C

GSC/MA0648.1/Jaspar

Match Rank:9
Score:0.75
Offset:2
Orientation:forward strand
Alignment:GGCTTAATCC--
--GCTAATCCCC
 C T A G T A C G A T G C C G A T G A C T T C G A C T G A C G A T T A G C G T A C A C G T A C G T
A C G T A C G T T A C G G A T C A G C T C T G A C G T A A C G T A G T C A G T C A T G C G A T C

PH0130.1_Otx2/Jaspar

Match Rank:10
Score:0.75
Offset:-2
Orientation:reverse strand
Alignment:--GGCTTAATCC-----
GANNATTAATCCCTNNN
 A C G T A C G T C T A G T A C G A T G C C G A T G A C T T C G A C T G A C G A T T A G C G T A C A C G T A C G T A C G T A C G T A C G T
C A T G G T C A G A T C C T G A T C G A G A C T C G A T C G T A C G T A C A G T G A T C A G T C A G T C A G C T G C T A G A T C G T C A