Information for 15-VAAAKGAGBTGCT (Motif 18)

T C G A C G T A G T C A C G T A A C T G A C T G C G T A A T C G A C T G A C G T C A T G T G A C A C G T
Reverse Opposite:
C G T A A C T G G T A C G T C A T G A C T A G C C G A T T A G C G T A C A C G T A C G T C G A T A G C T
p-value:1e-9
log p-value:-2.266e+01
Information Content per bp:1.692
Number of Target Sequences with motif10.0
Percentage of Target Sequences with motif1.54%
Number of Background Sequences with motif36.0
Percentage of Background Sequences with motif0.08%
Average Position of motif in Targets57.4 +/- 30.0bp
Average Position of motif in Background52.9 +/- 27.3bp
Strand Bias (log2 ratio + to - strand density)1.4
Multiplicity (# of sites on avg that occur together)1.10
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

POU6F2/MA0793.1/Jaspar

Match Rank:1
Score:0.66
Offset:0
Orientation:reverse strand
Alignment:VAAAKGAGBTGCT
NTAATGAGCT---
 T C G A C G T A G T C A C G T A A C T G A C T G C G T A A T C G A C T G A C G T C A T G T G A C A C G T
C G T A C G A T T G C A C T G A C A G T C A T G G T C A C T A G A T G C G A C T A C G T A C G T A C G T

PH0152.1_Pou6f1_2/Jaspar

Match Rank:2
Score:0.65
Offset:-4
Orientation:forward strand
Alignment:----VAAAKGAGBTGCT
AAACATAATGAGGTTGC
 A C G T A C G T A C G T A C G T T C G A C G T A G T C A C G T A A C T G A C T G C G T A A T C G A C T G A C G T C A T G T G A C A C G T
T C G A G T C A G C T A T A G C G C T A C G A T C G T A C G T A A C G T C A T G C G T A A C T G T A C G G C A T C A G T A C T G G T A C

PH0151.1_Pou6f1_1/Jaspar

Match Rank:3
Score:0.65
Offset:-4
Orientation:forward strand
Alignment:----VAAAKGAGBTGCT
GACGATAATGAGCTTGC
 A C G T A C G T A C G T A C G T T C G A C G T A G T C A C G T A A C T G A C T G C G T A A T C G A C T G A C G T C A T G T G A C A C G T
T A C G G C T A T G A C T A C G G C T A C G A T C G T A C G T A A C G T C A T G C G T A A C T G A T C G G C A T C A G T C T A G G T A C

PRDM9(Zf)/Testis-DMC1-ChIP-Seq(GSE35498)/Homer

Match Rank:4
Score:0.61
Offset:3
Orientation:reverse strand
Alignment:VAAAKGAGBTGCT-----
---AGATGCTRCTRCCHT
 T C G A C G T A G T C A C G T A A C T G A C T G C G T A A T C G A C T G A C G T C A T G T G A C A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T C G T A T C A G T G C A C G A T C T A G T G A C G A C T C T A G A G T C G A C T C T A G A G T C G A T C G C T A G A C T

Ascl2/MA0816.1/Jaspar

Match Rank:5
Score:0.57
Offset:3
Orientation:reverse strand
Alignment:VAAAKGAGBTGCT
---AGCAGCTGCT
 T C G A C G T A G T C A C G T A A C T G A C T G C G T A A T C G A C T G A C G T C A T G T G A C A C G T
A C G T A C G T A C G T C T G A T C A G T G A C C G T A A C T G T A G C C G A T C A T G A G T C A G C T

PH0154.1_Prrx1/Jaspar

Match Rank:6
Score:0.55
Offset:-4
Orientation:forward strand
Alignment:----VAAAKGAGBTGCT
GTAACTAATTAACTACT
 A C G T A C G T A C G T A C G T T C G A C G T A G T C A C G T A A C T G A C T G C G T A A T C G A C T G A C G T C A T G T G A C A C G T
T A C G A C G T G T C A T C G A A G T C G A C T T C G A C T G A A G C T A G C T C T G A T C G A A G T C C A G T C T G A T A G C A G C T

NOTO/MA0710.1/Jaspar

Match Rank:7
Score:0.54
Offset:-1
Orientation:reverse strand
Alignment:-VAAAKGAGBTGCT
NNTAATTAGN----
 A C G T T C G A C G T A G T C A C G T A A C T G A C T G C G T A A T C G A C T G A C G T C A T G T G A C A C G T
T A C G A G T C G A C T G T C A C G T A A C G T C A G T C G T A C T A G A T G C A C G T A C G T A C G T A C G T

JUND(var.2)/MA0492.1/Jaspar

Match Rank:8
Score:0.53
Offset:-1
Orientation:forward strand
Alignment:-VAAAKGAGBTGCT-
AAAGATGATGTCATC
 A C G T T C G A C G T A G T C A C G T A A C T G A C T G C G T A A T C G A C T G A C G T C A T G T G A C A C G T A C G T
C G T A C T G A C G T A T C A G T C G A A C G T A C T G C G T A A G C T T C A G A G C T T G A C C G T A A G C T T G A C

TFAP4/MA0691.1/Jaspar

Match Rank:9
Score:0.52
Offset:3
Orientation:reverse strand
Alignment:VAAAKGAGBTGCT
---ATCAGCTGTT
 T C G A C G T A G T C A C G T A A C T G A C T G C G T A A T C G A C T G A C G T C A T G T G A C A C G T
A C G T A C G T A C G T T C G A G C A T A T G C C G T A A T C G T A G C A C G T A C T G C G A T A C G T

Lhx2(Homeobox)/HFSC-Lhx2-ChIP-Seq(GSE48068)/Homer

Match Rank:10
Score:0.52
Offset:1
Orientation:forward strand
Alignment:VAAAKGAGBTGCT
-TAATTAGN----
 T C G A C G T A G T C A C G T A A C T G A C T G C G T A A T C G A C T G A C G T C A T G T G A C A C G T
A C G T A G C T G T C A C G T A A C G T A C G T C T G A T C A G A T G C A C G T A C G T A C G T A C G T