Information for 12-ATATCATTTAAAACTA (Motif 20)

C G T A A C G T C G T A A G C T A G T C C G T A A C G T A C G T A C G T C T G A C G T A T G C A G T C A A G T C A C G T G C T A
Reverse Opposite:
C G A T C G T A C T A G A C G T A C G T A C G T A G C T C G T A C G T A G T C A C G A T A C T G C T G A C G A T C G T A C G A T
p-value:1e-9
log p-value:-2.085e+01
Information Content per bp:1.788
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.80%
Number of Background Sequences with motif6.3
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets62.8 +/- 27.9bp
Average Position of motif in Background42.0 +/- 16.6bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

CHR(?)/Hela-CellCycle-Expression/Homer

Match Rank:1
Score:0.60
Offset:6
Orientation:reverse strand
Alignment:ATATCATTTAAAACTA
------TTTGAAACCG
 C G T A A C G T C G T A A G C T A G T C C G T A A C G T A C G T A C G T C T G A C G T A T G C A G T C A A G T C A C G T G C T A
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T T A C G C G T A C T G A C G T A G T A C A G T C A T C G

PH0113.1_Nkx2-4/Jaspar

Match Rank:2
Score:0.57
Offset:-1
Orientation:forward strand
Alignment:-ATATCATTTAAAACTA
TAAGCCACTTGAAATT-
 A C G T C G T A A C G T C G T A A G C T A G T C C G T A A C G T A C G T A C G T C T G A C G T A T G C A G T C A A G T C A C G T G C T A
G C A T C G T A C G T A C T A G T A G C G A T C G C T A G T A C A C G T G A C T T C A G C G T A T G C A G C T A G C A T G A C T A C G T

LIN54/MA0619.1/Jaspar

Match Rank:3
Score:0.57
Offset:5
Orientation:forward strand
Alignment:ATATCATTTAAAACTA
-----ATTTGAATT--
 C G T A A C G T C G T A A G C T A G T C C G T A A C G T A C G T A C G T C T G A C G T A T G C A G T C A A G T C A C G T G C T A
A C G T A C G T A C G T A C G T A C G T C G T A A C G T A C G T A G C T C T A G C G T A C G T A G A C T G A C T A C G T A C G T

BARHL2/MA0635.1/Jaspar

Match Rank:4
Score:0.56
Offset:2
Orientation:reverse strand
Alignment:ATATCATTTAAAACTA
--ANCGTTTANN----
 C G T A A C G T C G T A A G C T A G T C C G T A A C G T A C G T A C G T C T G A C G T A T G C A G T C A A G T C A C G T G C T A
A C G T A C G T C T G A A G T C G A T C C T A G G C A T A C G T C G A T C G T A C T A G A T G C A C G T A C G T A C G T A C G T

PH0114.1_Nkx2-5/Jaspar

Match Rank:5
Score:0.56
Offset:-1
Orientation:forward strand
Alignment:-ATATCATTTAAAACTA
TAAGCCACTTGAATTT-
 A C G T C G T A A C G T C G T A A G C T A G T C C G T A A C G T A C G T A C G T C T G A C G T A T G C A G T C A A G T C A C G T G C T A
G A C T C T G A C T G A C A T G T A G C A G T C G C T A G T A C A C G T G A C T T C A G C G T A T C G A G C A T G A C T A G C T A C G T

PH0115.1_Nkx2-6/Jaspar

Match Rank:6
Score:0.56
Offset:-1
Orientation:forward strand
Alignment:-ATATCATTTAAAACTA
TAAGCCACTTAACATT-
 A C G T C G T A A C G T C G T A A G C T A G T C C G T A A C G T A C G T A C G T C T G A C G T A T G C A G T C A A G T C A C G T G C T A
C A G T C T G A C T G A C A T G T A G C A G T C C G T A G T A C A C G T A G C T C T G A C G T A T G A C G C T A G A C T G A C T A C G T

PB0169.1_Sox15_2/Jaspar

Match Rank:7
Score:0.56
Offset:-4
Orientation:reverse strand
Alignment:----ATATCATTTAAAACTA
TNGAATTTCATTNAN-----
 A C G T A C G T A C G T A C G T C G T A A C G T C G T A A G C T A G T C C G T A A C G T A C G T A C G T C T G A C G T A T G C A G T C A A G T C A C G T G C T A
A G C T A T G C C T A G C T G A G T C A G A C T C A G T G C A T T G A C C T G A C A G T G A C T A G T C T G C A T G C A A C G T A C G T A C G T A C G T A C G T

SD0003.1_at_AC_acceptor/Jaspar

Match Rank:8
Score:0.55
Offset:-3
Orientation:forward strand
Alignment:---ATATCATTTAAAACTA
AAGATATCCTT--------
 A C G T A C G T A C G T C G T A A C G T C G T A A G C T A G T C C G T A A C G T A C G T A C G T C T G A C G T A T G C A G T C A A G T C A C G T G C T A
G C T A G C T A T C A G C G T A A C G T C T G A C G A T A T G C G A T C G C A T A G C T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

PH0111.1_Nkx2-2/Jaspar

Match Rank:9
Score:0.54
Offset:-1
Orientation:forward strand
Alignment:-ATATCATTTAAAACTA
ATAACCACTTGAAAATT
 A C G T C G T A A C G T C G T A A G C T A G T C C G T A A C G T A C G T A C G T C T G A C G T A T G C A G T C A A G T C A C G T G C T A
G C A T C G A T T C G A C T G A T A G C A G T C G C T A G T A C C G A T A G C T T C A G C G T A T C G A C G T A C G T A A C G T C G A T

Nkx2-5/MA0063.1/Jaspar

Match Rank:10
Score:0.54
Offset:4
Orientation:reverse strand
Alignment:ATATCATTTAAAACTA
----CAATTAA-----
 C G T A A C G T C G T A A G C T A G T C C G T A A C G T A C G T A C G T C T G A C G T A T G C A G T C A A G T C A C G T G C T A
A C G T A C G T A C G T A C G T G T A C C G T A G T C A A C G T A C G T C T G A G C T A A C G T A C G T A C G T A C G T A C G T