Information for 10-GAADGAGCACAGCATG (Motif 17)

C T A G G C T A C G T A C A G T T C A G C G T A T A C G A G T C G C T A T G A C C G T A C A T G A G T C C T G A C G A T A C T G
Reverse Opposite:
T G A C G C T A A G C T C T A G G A T C A C G T A C T G C A G T C T A G A T G C A C G T A G T C G C T A A C G T C A G T A G T C
p-value:1e-10
log p-value:-2.326e+01
Information Content per bp:1.705
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.80%
Number of Background Sequences with motif5.0
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets34.7 +/- 18.9bp
Average Position of motif in Background61.3 +/- 14.9bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0207.1_Zic3_2/Jaspar

Match Rank:1
Score:0.61
Offset:4
Orientation:forward strand
Alignment:GAADGAGCACAGCATG---
----GAGCACAGCAGGACA
 C T A G G C T A C G T A C A G T T C A G C G T A T A C G A G T C G C T A T G A C C G T A C A T G A G T C C T G A C G A T A C T G A C G T A C G T A C G T
A C G T A C G T A C G T A C G T C A T G C G T A C T A G T G A C C T G A A G T C C G T A C T A G A G T C C T G A A C T G A C T G G T C A T A G C C G T A

PB0206.1_Zic2_2/Jaspar

Match Rank:2
Score:0.56
Offset:4
Orientation:forward strand
Alignment:GAADGAGCACAGCATG---
----CCACACAGCAGGAGA
 C T A G G C T A C G T A C A G T T C A G C G T A T A C G A G T C G C T A T G A C C G T A C A T G A G T C C T G A C G A T A C T G A C G T A C G T A C G T
A C G T A C G T A C G T A C G T G A T C G A T C C G T A T G A C T C G A A G T C G C T A C T A G A G T C C T G A A C T G A C T G G T C A T C A G C G T A

Tcf7/MA0769.1/Jaspar

Match Rank:3
Score:0.56
Offset:1
Orientation:forward strand
Alignment:GAADGAGCACAGCATG
-AAAGATCAAAGG---
 C T A G G C T A C G T A C A G T T C A G C G T A T A C G A G T C G C T A T G A C C G T A C A T G A G T C C T G A C G A T A C T G
A C G T C T G A C T G A C G T A A T C G C G T A A C G T A T G C C G T A T C G A C G T A C T A G T C A G A C G T A C G T A C G T

PB0205.1_Zic1_2/Jaspar

Match Rank:4
Score:0.55
Offset:4
Orientation:forward strand
Alignment:GAADGAGCACAGCATG---
----CCACACAGCAGGAGA
 C T A G G C T A C G T A C A G T T C A G C G T A T A C G A G T C G C T A T G A C C G T A C A T G A G T C C T G A C G A T A C T G A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A G T C G T A C C G T A T G A C T C G A A G T C G C T A C T A G A G T C C T G A A C T G A C T G G T C A T C A G C G T A

PB0121.1_Foxj3_2/Jaspar

Match Rank:5
Score:0.55
Offset:2
Orientation:forward strand
Alignment:GAADGAGCACAGCATG---
--AACACCAAAACAAAGGA
 C T A G G C T A C G T A C A G T T C A G C G T A T A C G A G T C G C T A T G A C C G T A C A T G A G T C C T G A C G A T A C T G A C G T A C G T A C G T
A C G T A C G T G T C A C G T A A G T C C T G A G A T C G A T C T G C A G C T A G T C A C G T A A G T C C G T A C G T A G C T A C A T G T A C G C G T A

RUNX-AML(Runt)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer

Match Rank:6
Score:0.55
Offset:3
Orientation:reverse strand
Alignment:GAADGAGCACAGCATG
---AAACCACAGC---
 C T A G G C T A C G T A C A G T T C A G C G T A T A C G A G T C G C T A T G A C C G T A C A T G A G T C C T G A C G A T A C T G
A C G T A C G T A C G T G C T A T C G A T G C A T G A C G T A C T G C A A G T C C T G A C T A G T G A C A C G T A C G T A C G T

LEF1/MA0768.1/Jaspar

Match Rank:7
Score:0.55
Offset:1
Orientation:forward strand
Alignment:GAADGAGCACAGCATG
-AAAGATCAAAGGGTT
 C T A G G C T A C G T A C A G T T C A G C G T A T A C G A G T C G C T A T G A C C G T A C A T G A G T C C T G A C G A T A C T G
A C G T T C G A C T G A C T G A T A C G C G T A G C A T T A G C C G T A C T G A C T G A T C A G T C A G T C A G C G A T G C A T

Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer

Match Rank:8
Score:0.54
Offset:6
Orientation:reverse strand
Alignment:GAADGAGCACAGCATG
------DCTCAGCAGG
 C T A G G C T A C G T A C A G T T C A G C G T A T A C G A G T C G C T A T G A C C G T A C A T G A G T C C T G A C G A T A C T G
A C G T A C G T A C G T A C G T A C G T A C G T C A G T G T A C G C A T A G T C G C T A A C T G A G T C C T G A A C T G A C T G

Gfi1b/MA0483.1/Jaspar

Match Rank:9
Score:0.52
Offset:3
Orientation:forward strand
Alignment:GAADGAGCACAGCATG
---AAATCACAGCA--
 C T A G G C T A C G T A C A G T T C A G C G T A T A C G A G T C G C T A T G A C C G T A C A T G A G T C C T G A C G A T A C T G
A C G T A C G T A C G T T G C A C G T A C T G A A G C T A G T C G C T A T A G C C G T A C T A G G A T C G C T A A C G T A C G T

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:10
Score:0.52
Offset:7
Orientation:forward strand
Alignment:GAADGAGCACAGCATG---
-------CACAGCAGGGGG
 C T A G G C T A C G T A C A G T T C A G C G T A T A C G A G T C G C T A T G A C C G T A C A T G A G T C C T G A C G A T A C T G A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T T G A C G C T A T G A C C G T A T C A G G A T C C G T A C A T G C A T G C T A G C T A G C T A G