Information for 9-AAACACHCTTTAATCC (Motif 9)

C G T A C T G A C G T A A G T C C T G A A G T C G A T C A G T C A C G T A G C T C G A T C G T A C G T A A C G T A G T C A G T C
Reverse Opposite:
C T A G C T A G C G T A A C G T A C G T C G T A C T G A C G T A A C T G C A T G C T A G A G C T T C A G A C G T A G C T C G A T
p-value:1e-12
log p-value:-2.769e+01
Information Content per bp:1.826
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.86%
Number of Background Sequences with motif2.7
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets58.2 +/- 29.4bp
Average Position of motif in Background58.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)-1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

OTX2/MA0712.1/Jaspar

Match Rank:1
Score:0.66
Offset:9
Orientation:forward strand
Alignment:AAACACHCTTTAATCC-
---------TTAATCCT
 C G T A C T G A C G T A A G T C C T G A A G T C G A T C A G T C A C G T A G C T C G A T C G T A C G T A A C G T A G T C A G T C A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T G A C T G C A T C G T A C G T A C A G T G A T C A G T C A C G T

Pitx1/MA0682.1/Jaspar

Match Rank:2
Score:0.65
Offset:9
Orientation:forward strand
Alignment:AAACACHCTTTAATCC-
---------TTAATCCC
 C G T A C T G A C G T A A G T C C T G A A G T C G A T C A G T C A C G T A G C T C G A T C G T A C G T A A C G T A G T C A G T C A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T G A C T G C A T T C G A C G T A C A G T G A T C G A T C G T A C

PH0035.1_Gsc/Jaspar

Match Rank:3
Score:0.65
Offset:4
Orientation:forward strand
Alignment:AAACACHCTTTAATCC-----
----AATCGTTAATCCCTTTA
 C G T A C T G A C G T A A G T C C T G A A G T C G A T C A G T C A C G T A G C T C G A T C G T A C G T A A C G T A G T C A G T C A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T G C T A T C G A G C A T G T A C T C A G G A C T C G A T C T G A C G T A A C G T G A T C A G T C A T G C A G C T C A G T G C A T T G A C

Otx2(Homeobox)/EpiLC-Otx2-ChIP-Seq(GSE56098)/Homer

Match Rank:4
Score:0.64
Offset:8
Orientation:forward strand
Alignment:AAACACHCTTTAATCC--
--------NYTAATCCYB
 C G T A C T G A C G T A A G T C C T G A A G T C G A T C A G T C A C G T A G C T C G A T C G T A C G T A A C G T A G T C A G T C A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A T C G G A C T C G A T C G T A C G T A C A G T G A T C G A T C G A T C A G C T

Arid3a/MA0151.1/Jaspar

Match Rank:5
Score:0.64
Offset:8
Orientation:reverse strand
Alignment:AAACACHCTTTAATCC
--------TTTAAT--
 C G T A C T G A C G T A A G T C C T G A A G T C G A T C A G T C A C G T A G C T C G A T C G T A C G T A A C G T A G T C A G T C
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T G C A T A C G T A C G T C T G A C G T A A C G T A C G T A C G T

GSC(Homeobox)/FrogEmbryos-GSC-ChIP-Seq(DRA000576)/Homer

Match Rank:6
Score:0.64
Offset:9
Orientation:reverse strand
Alignment:AAACACHCTTTAATCC-
---------YTAATCCY
 C G T A C T G A C G T A A G T C C T G A A G T C G A T C A G T C A C G T A G C T C G A T C G T A C G T A A C G T A G T C A G T C A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T G A T C G C A T C G T A C G T A A C G T G A T C G A T C A G T C

OTX1/MA0711.1/Jaspar

Match Rank:7
Score:0.63
Offset:9
Orientation:forward strand
Alignment:AAACACHCTTTAATCC-
---------TTAATCCG
 C G T A C T G A C G T A A G T C C T G A A G T C G A T C A G T C A C G T A G C T C G A T C G T A C G T A A C G T A G T C A G T C A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T G A C T G C A T C G T A C G T A C A G T T A G C A T G C A T C G

PB0040.1_Lef1_1/Jaspar

Match Rank:8
Score:0.63
Offset:2
Orientation:forward strand
Alignment:AAACACHCTTTAATCC---
--AATCCCTTTGATCTATC
 C G T A C T G A C G T A A G T C C T G A A G T C G A T C A G T C A C G T A G C T C G A T C G T A C G T A A C G T A G T C A G T C A C G T A C G T A C G T
A C G T A C G T C T A G C T G A C G A T A G T C A G T C A G T C G A C T G A C T C G A T A T C G C G T A C G A T T A G C G C A T C G T A C G A T T G A C

PH0137.1_Pitx1/Jaspar

Match Rank:9
Score:0.63
Offset:5
Orientation:reverse strand
Alignment:AAACACHCTTTAATCC------
-----NTTGTTAATCCCTCTNN
 C G T A C T G A C G T A A G T C C T G A A G T C G A T C A G T C A C G T A G C T C G A T C G T A C G T A A C G T A G T C A G T C A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T C G T A C A G T G A C T C A T G G A C T C G A T C G T A C G T A A C G T G A T C A G T C A G T C G A C T A G T C A G C T T G C A C T G A

PITX3/MA0714.1/Jaspar

Match Rank:10
Score:0.63
Offset:8
Orientation:forward strand
Alignment:AAACACHCTTTAATCC-
--------CTTAATCCC
 C G T A C T G A C G T A A G T C C T G A A G T C G A T C A G T C A C G T A G C T C G A T C G T A C G T A A C G T A G T C A G T C A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T T A G C G A C T G C A T C T G A C T G A C A G T G T A C A G T C G A T C