Information for 6-CTKCCTGCTGAGM (Motif 4)

T G A C G A C T A C T G A G T C G T A C C G A T A C T G A T G C C G A T T A C G C T G A C T A G G T A C
Reverse Opposite:
C A T G A G T C A G C T A T G C C G T A A T C G T G A C C G T A A C T G A C T G T G A C C G T A A C T G
p-value:1e-16
log p-value:-3.697e+01
Information Content per bp:1.660
Number of Target Sequences with motif30.0
Percentage of Target Sequences with motif4.32%
Number of Background Sequences with motif274.8
Percentage of Background Sequences with motif0.59%
Average Position of motif in Targets55.7 +/- 23.0bp
Average Position of motif in Background50.0 +/- 31.3bp
Strand Bias (log2 ratio + to - strand density)-0.4
Multiplicity (# of sites on avg that occur together)1.11
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:1
Score:0.82
Offset:0
Orientation:reverse strand
Alignment:CTKCCTGCTGAGM
CCCCCTGCTGTG-
 T G A C G A C T A C T G A G T C G T A C C G A T A C T G A T G C C G A T T A C G C T G A C T A G G T A C
G A T C G A T C G A T C G T A C G T A C G C A T C T A G A G T C G C A T A C T G C G A T A C T G A C G T

Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer

Match Rank:2
Score:0.81
Offset:-2
Orientation:forward strand
Alignment:--CTKCCTGCTGAGM
GGCCYCCTGCTGDGH
 A C G T A C G T T G A C G A C T A C T G A G T C G T A C C G A T A C T G A T G C C G A T T A C G C T G A C T A G G T A C
C A T G T A C G T A G C G A T C G A T C A T G C G T A C G A C T T C A G A T G C C G A T A T C G C A G T A C T G G T A C

Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer

Match Rank:3
Score:0.80
Offset:3
Orientation:forward strand
Alignment:CTKCCTGCTGAGM
---CCTGCTGAGH
 T G A C G A C T A C T G A G T C G T A C C G A T A C T G A T G C C G A T T A C G C T G A C T A G G T A C
A C G T A C G T A C G T A G T C G T A C A G C T C T A G A G T C C G A T A C T G C G T A A C T G G T C A

PB0206.1_Zic2_2/Jaspar

Match Rank:4
Score:0.78
Offset:0
Orientation:reverse strand
Alignment:CTKCCTGCTGAGM--
TCNCCTGCTGNGNNN
 T G A C G A C T A C T G A G T C G T A C C G A T A C T G A T G C C G A T T A C G C T G A C T A G G T A C A C G T A C G T
G C A T A G T C A C G T T G A C T G A C G A C T T C A G A G T C C G A T C T A G A G C T A C T G G A C T C A T G C T A G

PB0205.1_Zic1_2/Jaspar

Match Rank:5
Score:0.78
Offset:0
Orientation:reverse strand
Alignment:CTKCCTGCTGAGM--
TNTCCTGCTGTGNNG
 T G A C G A C T A C T G A G T C G T A C C G A T A C T G A T G C C G A T T A C G C T G A C T A G G T A C A C G T A C G T
G C A T A G T C C A G T T G A C G T A C G A C T T C A G A G T C C G A T C T A G A G C T A C T G G C A T C A T G T C A G

PB0207.1_Zic3_2/Jaspar

Match Rank:6
Score:0.76
Offset:0
Orientation:reverse strand
Alignment:CTKCCTGCTGAGM--
NNTCCTGCTGTGNNN
 T G A C G A C T A C T G A G T C G T A C C G A T A C T G A T G C C G A T T A C G C T G A C T A G G T A C A C G T A C G T
G C A T A T C G C A G T T G A C T G A C G A C T T C A G A G T C C G A T C T A G G A C T A C T G G A T C G C A T G T A C

ELF3(ETS)/PDAC-ELF3-ChIP-Seq(GSE64557)/Homer

Match Rank:7
Score:0.63
Offset:-1
Orientation:reverse strand
Alignment:-CTKCCTGCTGAGM
ACTTCCTGNT----
 A C G T T G A C G A C T A C T G A G T C G T A C C G A T A C T G A T G C C G A T T A C G C T G A C T A G G T A C
C T G A A G T C C G A T A C G T A G T C A G T C A C G T A T C G A C T G G C A T A C G T A C G T A C G T A C G T

ZIC3/MA0697.1/Jaspar

Match Rank:8
Score:0.62
Offset:-2
Orientation:forward strand
Alignment:--CTKCCTGCTGAGM
GACCCCCCGCTGCGC
 A C G T A C G T T G A C G A C T A C T G A G T C G T A C C G A T A C T G A T G C C G A T T A C G C T G A C T A G G T A C
A C T G T C G A G T A C G A T C G T A C A G T C A G T C A G T C T C A G A G T C A C G T C A T G G A T C C A T G G T A C

ZIC4/MA0751.1/Jaspar

Match Rank:9
Score:0.61
Offset:-2
Orientation:forward strand
Alignment:--CTKCCTGCTGAGM
GACCCCCCGCTGTGC
 A C G T A C G T T G A C G A C T A C T G A G T C G T A C C G A T A C T G A T G C C G A T T A C G C T G A C T A G G T A C
A C T G T C G A G T A C G T A C G T A C G T A C G T A C G A T C C T A G A G T C C A G T C T A G G A C T A C T G G T A C

EHF(ETS)/LoVo-EHF-ChIP-Seq(GSE49402)/Homer

Match Rank:10
Score:0.61
Offset:-1
Orientation:reverse strand
Alignment:-CTKCCTGCTGAGM
ACTTCCTGBT----
 A C G T T G A C G A C T A C T G A G T C G T A C C G A T A C T G A T G C C G A T T A C G C T G A C T A G G T A C
C T G A A G T C A C G T A C G T A G T C A G T C A C G T A T C G A T C G G C A T A C G T A C G T A C G T A C G T