Information for 8-ABVTTWAKCCCATACC (Motif 9)

C G T A A G T C T A C G G A C T A G C T C G T A G T C A A C G T A G T C A G T C G T A C C T G A A C G T C G T A A G T C A G T C
Reverse Opposite:
C T A G T C A G G C A T T G C A A G C T A C T G A C T G C T A G G T C A C A G T C G A T T C G A C T G A A T G C T C A G C G A T
p-value:1e-11
log p-value:-2.701e+01
Information Content per bp:1.607
Number of Target Sequences with motif13.0
Percentage of Target Sequences with motif1.77%
Number of Background Sequences with motif49.7
Percentage of Background Sequences with motif0.10%
Average Position of motif in Targets49.5 +/- 21.3bp
Average Position of motif in Background49.2 +/- 25.3bp
Strand Bias (log2 ratio + to - strand density)-0.7
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PITX3/MA0714.1/Jaspar

Match Rank:1
Score:0.65
Offset:2
Orientation:forward strand
Alignment:ABVTTWAKCCCATACC
--CTTAATCCC-----
 C G T A A G T C T A C G G A C T A G C T C G T A G T C A A C G T A G T C A G T C G T A C C T G A A C G T C G T A A G T C A G T C
A C G T A C G T T A G C G A C T G C A T C T G A C T G A C A G T G T A C A G T C G A T C A C G T A C G T A C G T A C G T A C G T

RHOXF1/MA0719.1/Jaspar

Match Rank:2
Score:0.65
Offset:3
Orientation:forward strand
Alignment:ABVTTWAKCCCATACC
---ATAATCCC-----
 C G T A A G T C T A C G G A C T A G C T C G T A G T C A A C G T A G T C A G T C G T A C C T G A A C G T C G T A A G T C A G T C
A C G T A C G T A C G T G C T A C G A T C T G A C G T A A C G T A G T C A G T C G T A C A C G T A C G T A C G T A C G T A C G T

Pitx1/MA0682.1/Jaspar

Match Rank:3
Score:0.64
Offset:3
Orientation:forward strand
Alignment:ABVTTWAKCCCATACC
---TTAATCCC-----
 C G T A A G T C T A C G G A C T A G C T C G T A G T C A A C G T A G T C A G T C G T A C C T G A A C G T C G T A A G T C A G T C
A C G T A C G T A C G T G A C T G C A T T C G A C G T A C A G T G A T C G A T C G T A C A C G T A C G T A C G T A C G T A C G T

PH0035.1_Gsc/Jaspar

Match Rank:4
Score:0.62
Offset:-2
Orientation:forward strand
Alignment:--ABVTTWAKCCCATACC
AATCGTTAATCCCTTTA-
 A C G T A C G T C G T A A G T C T A C G G A C T A G C T C G T A G T C A A C G T A G T C A G T C G T A C C T G A A C G T C G T A A G T C A G T C
G C T A T C G A G C A T G T A C T C A G G A C T C G A T C T G A C G T A A C G T G A T C A G T C A T G C A G C T C A G T G C A T T G A C A C G T

CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer

Match Rank:5
Score:0.62
Offset:2
Orientation:forward strand
Alignment:ABVTTWAKCCCATACC
--GCTAATCC------
 C G T A A G T C T A C G G A C T A G C T C G T A G T C A A C G T A G T C A G T C G T A C C T G A A C G T C G T A A G T C A G T C
A C G T A C G T A T C G G A T C G C A T C G T A G T C A A C G T A T G C A G T C A C G T A C G T A C G T A C G T A C G T A C G T

PB0098.1_Zfp410_1/Jaspar

Match Rank:6
Score:0.60
Offset:0
Orientation:reverse strand
Alignment:ABVTTWAKCCCATACC-
NNNTCCATCCCATAANN
 C G T A A G T C T A C G G A C T A G C T C G T A G T C A A C G T A G T C A G T C G T A C C T G A A C G T C G T A A G T C A G T C A C G T
A C G T G C A T G T C A A C G T T G A C G A T C G C T A A G C T G A T C G A T C G A T C C G T A C A G T G C T A G T C A A G C T G C T A

Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer

Match Rank:7
Score:0.60
Offset:4
Orientation:forward strand
Alignment:ABVTTWAKCCCATACC
----TAATCCCN----
 C G T A A G T C T A C G G A C T A G C T C G T A G T C A A C G T A G T C A G T C G T A C C T G A A C G T C G T A A G T C A G T C
A C G T A C G T A C G T A C G T C G A T C T G A C G T A C A G T A G T C G A T C G A T C A C T G A C G T A C G T A C G T A C G T

PH0137.1_Pitx1/Jaspar

Match Rank:8
Score:0.60
Offset:-1
Orientation:reverse strand
Alignment:-ABVTTWAKCCCATACC
NTTGTTAATCCCTCTNN
 A C G T C G T A A G T C T A C G G A C T A G C T C G T A G T C A A C G T A G T C A G T C G T A C C T G A A C G T C G T A A G T C A G T C
C G T A C A G T G A C T C A T G G A C T C G A T C G T A C G T A A C G T G A T C A G T C A G T C G A C T A G T C A G C T T G C A C T G A

Otx2(Homeobox)/EpiLC-Otx2-ChIP-Seq(GSE56098)/Homer

Match Rank:9
Score:0.59
Offset:2
Orientation:forward strand
Alignment:ABVTTWAKCCCATACC
--NYTAATCCYB----
 C G T A A G T C T A C G G A C T A G C T C G T A G T C A A C G T A G T C A G T C G T A C C T G A A C G T C G T A A G T C A G T C
A C G T A C G T A T C G G A C T C G A T C G T A C G T A C A G T G A T C G A T C G A T C A G C T A C G T A C G T A C G T A C G T

PH0015.1_Crx/Jaspar

Match Rank:10
Score:0.59
Offset:0
Orientation:reverse strand
Alignment:ABVTTWAKCCCATACC
AGGCTAATCCCCAANG
 C G T A A G T C T A C G G A C T A G C T C G T A G T C A A C G T A G T C A G T C G T A C C T G A A C G T C G T A A G T C A G T C
G T C A T A C G T C A G G A T C C G A T C G T A C G T A A C G T A G T C A G T C A T G C A T G C G C T A G C T A T G A C T C A G