Information for 20-CCTTCAAGACAAAAGA (Motif 24)

G A T C G T A C A C G T C G A T G T A C C G T A G T C A C A T G C G T A A G T C C G T A T C G A G T C A C T G A A T C G C T G A
Reverse Opposite:
G A C T A T G C G A C T C A G T A C G T C G A T C T A G C G A T G T A C A C G T C G A T A C T G C G T A C G T A C A T G C A T G
p-value:1e-9
log p-value:-2.153e+01
Information Content per bp:1.687
Number of Target Sequences with motif13.0
Percentage of Target Sequences with motif1.77%
Number of Background Sequences with motif77.1
Percentage of Background Sequences with motif0.16%
Average Position of motif in Targets54.5 +/- 26.8bp
Average Position of motif in Background52.4 +/- 27.4bp
Strand Bias (log2 ratio + to - strand density)0.2
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

SA0002.1_at_AC_acceptor/Jaspar

Match Rank:1
Score:0.62
Offset:-2
Orientation:reverse strand
Alignment:--CCTTCAAGACAAAAGA--
NNCCTGNAAAAAAAAAAAAA
 A C G T A C G T G A T C G T A C A C G T C G A T G T A C C G T A G T C A C A T G C G T A A G T C C G T A T C G A G T C A C T G A A T C G C T G A A C G T A C G T
G C T A C G T A A G T C A G T C A C G T C T A G C T G A C T G A C T G A C T G A C T G A T C G A T C G A T C G A T C G A C T G A C T G A C T G A T C G A C T G A

SA0001.1_at_AC_acceptor/Jaspar

Match Rank:2
Score:0.62
Offset:-2
Orientation:reverse strand
Alignment:--CCTTCAAGACAAAAGA--
NNCCTGNAAAAAAAAAAAAA
 A C G T A C G T G A T C G T A C A C G T C G A T G T A C C G T A G T C A C A T G C G T A A G T C C G T A T C G A G T C A C T G A A T C G C T G A A C G T A C G T
G C T A G C T A A G T C A G T C A C G T C T A G C T G A C T G A C T G A C T G A C T G A T C G A T C G A T C G A T C G A T C G A T C G A T C G A C T G A C T G A

Sox3/MA0514.1/Jaspar

Match Rank:3
Score:0.60
Offset:5
Orientation:reverse strand
Alignment:CCTTCAAGACAAAAGA
-----AAAACAAAGG-
 G A T C G T A C A C G T C G A T G T A C C G T A G T C A C A T G C G T A A G T C C G T A T C G A G T C A C T G A A T C G C T G A
A C G T A C G T A C G T A C G T A C G T T C G A T C G A T C G A C G T A A T G C C G T A C G T A C G T A C T A G T A C G A C G T

PB0123.1_Foxl1_2/Jaspar

Match Rank:4
Score:0.53
Offset:0
Orientation:forward strand
Alignment:CCTTCAAGACAAAAGA
ATATCAAAACAAAACA
 G A T C G T A C A C G T C G A T G T A C C G T A G T C A C A T G C G T A A G T C C G T A T C G A G T C A C T G A A T C G C T G A
G C T A C G A T C G T A C G A T G A T C G C T A G C T A G T C A C G T A A G T C C G T A C G T A G T C A C G T A G T A C G T C A

Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer

Match Rank:5
Score:0.53
Offset:7
Orientation:reverse strand
Alignment:CCTTCAAGACAAAAGA
-------RACAAWGG-
 G A T C G T A C A C G T C G A T G T A C C G T A G T C A C A T G C G T A A G T C C G T A T C G A G T C A C T G A A T C G C T G A
A C G T A C G T A C G T A C G T A C G T A C G T A C G T T C G A G T C A T G A C C G T A C G T A C G T A C T A G T A C G A C G T

PB0182.1_Srf_2/Jaspar

Match Rank:6
Score:0.53
Offset:1
Orientation:forward strand
Alignment:CCTTCAAGACAAAAGA--
-GTTAAAAAAAAAAATTA
 G A T C G T A C A C G T C G A T G T A C C G T A G T C A C A T G C G T A A G T C C G T A T C G A G T C A C T G A A T C G C T G A A C G T A C G T
A C G T T A C G A C G T C G A T C G T A C T G A C T G A T G C A T G C A G T C A G C T A G T C A G T C A G T C A T G C A A C G T G C A T G C A T

POL008.1_DCE_S_I/Jaspar

Match Rank:7
Score:0.52
Offset:0
Orientation:forward strand
Alignment:CCTTCAAGACAAAAGA
GCTTCC----------
 G A T C G T A C A C G T C G A T G T A C C G T A G T C A C A T G C G T A A G T C C G T A T C G A G T C A C T G A A T C G C T G A
A C T G A T G C A G C T A C G T A T G C A T G C A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

STAT6(Stat)/CD4-Stat6-ChIP-Seq(GSE22104)/Homer

Match Rank:8
Score:0.52
Offset:2
Orientation:reverse strand
Alignment:CCTTCAAGACAAAAGA
--TTCTNNAGAANT--
 G A T C G T A C A C G T C G A T G T A C C G T A G T C A C A T G C G T A A G T C C G T A T C G A G T C A C T G A A T C G C T G A
A C G T A C G T A C G T A C G T A G T C G A C T A G C T C T G A C T G A C T A G C G T A C G T A T C G A G A C T A C G T A C G T

Stat6/MA0520.1/Jaspar

Match Rank:9
Score:0.52
Offset:-1
Orientation:forward strand
Alignment:-CCTTCAAGACAAAAGA
CATTTCCTGAGAAAT--
 A C G T G A T C G T A C A C G T C G A T G T A C C G T A G T C A C A T G C G T A A G T C C G T A T C G A G T C A C T G A A T C G C T G A
A T G C C G T A A G C T A C G T C G A T G T A C G A T C C G A T T A C G C T G A C A T G C G T A C T G A T G C A G A C T A C G T A C G T

PB0061.1_Sox11_1/Jaspar

Match Rank:10
Score:0.52
Offset:2
Orientation:forward strand
Alignment:CCTTCAAGACAAAAGA---
--ATAAGAACAAAGGACTA
 G A T C G T A C A C G T C G A T G T A C C G T A G T C A C A T G C G T A A G T C C G T A T C G A G T C A C T G A A T C G C T G A A C G T A C G T A C G T
A C G T A C G T G C T A A C G T C G T A C G T A C T A G T C G A C G T A A G T C C G T A G T C A C G T A C T A G T C A G T C G A A G T C G C A T G C T A