Information for 12-GTAGGTGACAGACAGT (Motif 13)

C T A G C G A T C G T A A C T G A C T G A C G T A C T G C T G A A G T C C G T A A C T G C G T A G T A C C G T A A T C G C G A T
Reverse Opposite:
G C T A A T G C A C G T A C T G A C G T A G T C A C G T A C T G A G C T A G T C C G T A A G T C G T A C A C G T C G T A A G T C
p-value:1e-11
log p-value:-2.568e+01
Information Content per bp:1.901
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.68%
Number of Background Sequences with motif1.9
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets46.2 +/- 20.7bp
Average Position of motif in Background51.9 +/- 5.7bp
Strand Bias (log2 ratio + to - strand density)-1.0
Multiplicity (# of sites on avg that occur together)1.20
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

SMAD2::SMAD3::SMAD4/MA0513.1/Jaspar

Match Rank:1
Score:0.85
Offset:2
Orientation:reverse strand
Alignment:GTAGGTGACAGACAGT
--AGGTGNCAGACAG-
 C T A G C G A T C G T A A C T G A C T G A C G T A C T G C T G A A G T C C G T A A C T G C G T A G T A C C G T A A T C G C G A T
A C G T A C G T C T G A C T A G A T C G C G A T A T C G G T C A A T G C C G T A A C T G T G C A A G T C C G T A A T C G A C G T

Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer

Match Rank:2
Score:0.81
Offset:2
Orientation:forward strand
Alignment:GTAGGTGACAGACAGT
--AGGTGHCAGACA--
 C T A G C G A T C G T A A C T G A C T G A C G T A C T G C T G A A G T C C G T A A C T G C G T A G T A C C G T A A T C G C G A T
A C G T A C G T C T G A C T A G A T C G G C A T A C T G G T A C A T G C C G T A A C T G G C T A A G T C C G T A A C G T A C G T

Tbx5(T-box)/HL1-Tbx5.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:3
Score:0.63
Offset:2
Orientation:forward strand
Alignment:GTAGGTGACAGACAGT
--AGGTGTCA------
 C T A G C G A T C G T A A C T G A C T G A C G T A C T G C T G A A G T C C G T A A C T G C G T A G T A C C G T A A T C G C G A T
A C G T A C G T C T G A C T A G A T C G A G C T A C T G G A C T A G T C C T G A A C G T A C G T A C G T A C G T A C G T A C G T

Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer

Match Rank:4
Score:0.61
Offset:4
Orientation:reverse strand
Alignment:GTAGGTGACAGACAGT
----NTGATTGACAGN
 C T A G C G A T C G T A A C T G A C T G A C G T A C T G C T G A A G T C C G T A A C T G C G T A G T A C C G T A A T C G C G A T
A C G T A C G T A C G T A C G T A C G T C G A T A T C G C G T A A C G T C A G T A C T G C T G A A G T C C T G A A T C G A T C G

Tgif2(Homeobox)/mES-Tgif2-ChIP-Seq(GSE55404)/Homer

Match Rank:5
Score:0.60
Offset:2
Orientation:reverse strand
Alignment:GTAGGTGACAGACAGT
--ARNTGACA------
 C T A G C G A T C G T A A C T G A C T G A C G T A C T G C T G A A G T C C G T A A C T G C G T A G T A C C G T A A T C G C G A T
A C G T A C G T T G C A C T A G G A T C A C G T C T A G C G T A G T A C T C G A A C G T A C G T A C G T A C G T A C G T A C G T

Meis1(Homeobox)/MastCells-Meis1-ChIP-Seq(GSE48085)/Homer

Match Rank:6
Score:0.60
Offset:3
Orientation:reverse strand
Alignment:GTAGGTGACAGACAGT
---VBTGWCAGCB---
 C T A G C G A T C G T A A C T G A C T G A C G T A C T G C T G A A G T C C G T A A C T G C G T A G T A C C G T A A T C G C G A T
A C G T A C G T A C G T T C A G A T G C A C G T A C T G C G T A A G T C C G T A A T C G A T G C A G T C A C G T A C G T A C G T

Pknox1(Homeobox)/ES-Prep1-ChIP-Seq(GSE63282)/Homer

Match Rank:7
Score:0.59
Offset:4
Orientation:reverse strand
Alignment:GTAGGTGACAGACAGT
----BTGABTGACAGS
 C T A G C G A T C G T A A C T G A C T G A C G T A C T G C T G A A G T C C G T A A C T G C G T A G T A C C G T A A T C G C G A T
A C G T A C G T A C G T A C G T A C G T C G A T A C T G C G T A A C G T A C G T A C T G C T G A A G T C C T G A T A C G A T G C

PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer

Match Rank:8
Score:0.59
Offset:5
Orientation:reverse strand
Alignment:GTAGGTGACAGACAGT-
-----TGAGTGACAGSC
 C T A G C G A T C G T A A C T G A C T G A C G T A C T G C T G A A G T C C G T A A C T G C G T A G T A C C G T A A T C G C G A T A C G T
A C G T A C G T A C G T A C G T A C G T C G A T A T C G T C G A A C T G C G A T A T C G C T G A A G T C C G T A A T C G T A C G G A T C

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:9
Score:0.59
Offset:7
Orientation:reverse strand
Alignment:GTAGGTGACAGACAGT
-------CCAGACAG-
 C T A G C G A T C G T A A C T G A C T G A C G T A C T G C T G A A G T C C G T A A C T G C G T A G T A C C G T A A T C G C G A T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A T G C A G T C T G C A C T A G G T C A G T A C C T G A T A C G A C G T

MEIS3/MA0775.1/Jaspar

Match Rank:10
Score:0.58
Offset:4
Orientation:forward strand
Alignment:GTAGGTGACAGACAGT
----TTGACAGG----
 C T A G C G A T C G T A A C T G A C T G A C G T A C T G C T G A A G T C C G T A A C T G C G T A G T A C C G T A A T C G C G A T
A C G T A C G T A C G T A C G T C G A T G C A T A T C G C T G A G A T C C T G A A C T G A T C G A C G T A C G T A C G T A C G T