Motif Name	Consensus	P-value	Log P-value	q-value (Benjamini)	# of Target Sequences with Motif(of 744)	% of Target Sequences with Motif	# of Background Sequences with Motif(of 47894)	% of Background Sequences with Motif
OCT4-SOX2-TCF-NANOG(POU,Homeobox,HMG)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAACAATG	1e-58	-1.338e+02	0.0000	85.0	11.42%	498.1	1.04%
TEAD4(TEA)/Tropoblast-Tead4-ChIP-Seq(GSE37350)/Homer	CCWGGAATGY	1e-44	-1.018e+02	0.0000	141.0	18.95%	2257.9	4.71%
Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer	GGCCYCCTGCTGDGH	1e-43	-9.977e+01	0.0000	90.0	12.10%	888.1	1.85%
Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer	CCTGCTGAGH	1e-42	-9.839e+01	0.0000	116.0	15.59%	1572.9	3.28%
Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer	CCWTTGTY	1e-38	-8.931e+01	0.0000	202.0	27.15%	4827.7	10.07%
Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	CACAGCAGGGGG	1e-38	-8.846e+01	0.0000	91.0	12.23%	1054.8	2.20%
TEAD(TEA)/Fibroblast-PU.1-ChIP-Seq(Unpublished)/Homer	YCWGGAATGY	1e-36	-8.356e+01	0.0000	122.0	16.40%	2033.8	4.24%
TEAD2(TEA)/Py2T-Tead2-ChIP-Seq(GSE55709)/Homer	CCWGGAATGY	1e-35	-8.249e+01	0.0000	99.0	13.31%	1359.9	2.84%
Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer	BCCATTGTTC	1e-32	-7.508e+01	0.0000	124.0	16.67%	2294.1	4.78%
Oct4(POU,Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAW	1e-28	-6.503e+01	0.0000	92.0	12.37%	1479.0	3.08%
Sox15(HMG)/CPA-Sox15-ChIP-Seq(GSE62909)/Homer	RAACAATGGN	1e-27	-6.368e+01	0.0000	130.0	17.47%	2823.8	5.89%
Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer	CCATTGTTNY	1e-25	-5.879e+01	0.0000	170.0	22.85%	4628.3	9.65%
Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer	CCWTTGTYYB	1e-23	-5.467e+01	0.0000	161.0	21.64%	4413.7	9.20%
Sox17(HMG)/Endoderm-Sox17-ChIP-Seq(GSE61475)/Homer	CCATTGTTYB	1e-23	-5.309e+01	0.0000	96.0	12.90%	1893.9	3.95%
Brn1(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer	TATGCWAATBAV	1e-16	-3.899e+01	0.0000	56.0	7.53%	914.0	1.91%
Oct2(POU,Homeobox)/Bcell-Oct2-ChIP-Seq(GSE21512)/Homer	ATATGCAAAT	1e-15	-3.511e+01	0.0000	52.0	6.99%	873.9	1.82%
Oct6(POU,Homeobox)/NPC-Pou3f1-ChIP-Seq(GSE35496)/Homer	WATGCAAATGAG	1e-15	-3.493e+01	0.0000	64.0	8.60%	1275.4	2.66%
Gata6(Zf)/HUG1N-GATA6-ChIP-Seq(GSE51936)/Homer	YCTTATCTBN	1e-14	-3.271e+01	0.0000	84.0	11.29%	2099.3	4.38%
Gata4(Zf)/Heart-Gata4-ChIP-Seq(GSE35151)/Homer	NBWGATAAGR	1e-13	-3.123e+01	0.0000	88.0	11.83%	2321.9	4.84%
GSC(Homeobox)/FrogEmbryos-GSC-ChIP-Seq(DRA000576)/Homer	RGGATTAR	1e-13	-3.087e+01	0.0000	105.0	14.11%	3062.5	6.39%
CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer	GCTAATCC	1e-12	-2.947e+01	0.0000	168.0	22.58%	6141.7	12.81%
Otx2(Homeobox)/EpiLC-Otx2-ChIP-Seq(GSE56098)/Homer	NYTAATCCYB	1e-12	-2.871e+01	0.0000	76.0	10.22%	1935.3	4.04%
Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer	YCTTTGTTCC	1e-12	-2.812e+01	0.0000	79.0	10.62%	2081.7	4.34%
FOXA1(Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WAAGTAAACA	1e-12	-2.799e+01	0.0000	106.0	14.25%	3255.9	6.79%
GATA3(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATAASR	1e-11	-2.684e+01	0.0000	114.0	15.32%	3687.7	7.69%
Sox9(HMG)/Limb-SOX9-ChIP-Seq(GSE73225)/Homer	AGGVNCCTTTGT	1e-10	-2.464e+01	0.0000	73.0	9.81%	1983.8	4.14%
Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer	TAATCCCN	1e-10	-2.461e+01	0.0000	291.0	39.11%	13349.1	27.84%
Foxa2(Forkhead)/Liver-Foxa2-ChIP-Seq(GSE25694)/Homer	CYTGTTTACWYW	1e-10	-2.377e+01	0.0000	75.0	10.08%	2107.1	4.39%
FOXA1(Forkhead)/MCF7-FOXA1-ChIP-Seq(GSE26831)/Homer	WAAGTAAACA	1e-10	-2.343e+01	0.0000	86.0	11.56%	2603.8	5.43%
FOXK1(Forkhead)/HEK293-FOXK1-ChIP-Seq(GSE51673)/Homer	NVWTGTTTAC	1e-8	-1.989e+01	0.0000	86.0	11.56%	2804.8	5.85%
FoxL2(Forkhead)/Ovary-FoxL2-ChIP-Seq(GSE60858)/Homer	WWTRTAAACAVG	1e-8	-1.984e+01	0.0000	70.0	9.41%	2085.1	4.35%
Gata2(Zf)/K562-GATA2-ChIP-Seq(GSE18829)/Homer	BBCTTATCTS	1e-8	-1.905e+01	0.0000	54.0	7.26%	1442.6	3.01%
Pit1(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer	ATGMATATDC	1e-7	-1.760e+01	0.0000	84.0	11.29%	2857.0	5.96%
Foxa3(Forkhead)/Liver-Foxa3-ChIP-Seq(GSE77670)/Homer	BSNTGTTTACWYWGN	1e-7	-1.723e+01	0.0000	35.0	4.70%	770.5	1.61%
Foxo3(Forkhead)/U2OS-Foxo3-ChIP-Seq(E-MTAB-2701)/Homer	DGTAAACA	1e-7	-1.721e+01	0.0000	64.0	8.60%	1960.8	4.09%
FOXM1(Forkhead)/MCF7-FOXM1-ChIP-Seq(GSE72977)/Homer	TRTTTACTTW	1e-7	-1.706e+01	0.0000	82.0	11.02%	2797.2	5.83%
Fox:Ebox(Forkhead,bHLH)/Panc1-Foxa2-ChIP-Seq(GSE47459)/Homer	NNNVCTGWGYAAACASN	1e-7	-1.654e+01	0.0000	72.0	9.68%	2362.5	4.93%
Jun-AP1(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	GATGASTCATCN	1e-7	-1.640e+01	0.0000	22.0	2.96%	354.6	0.74%
Tbr1(T-box)/Cortex-Tbr1-ChIP-Seq(GSE71384)/Homer	AAGGTGTKAA	1e-6	-1.598e+01	0.0000	99.0	13.31%	3704.1	7.72%
Foxf1(Forkhead)/Lung-Foxf1-ChIP-Seq(GSE77951)/Homer	WWATRTAAACAN	1e-6	-1.582e+01	0.0000	69.0	9.27%	2268.5	4.73%
Gata1(Zf)/K562-GATA1-ChIP-Seq(GSE18829)/Homer	SAGATAAGRV	1e-6	-1.469e+01	0.0000	45.0	6.05%	1265.1	2.64%
Fra2(bZIP)/Striatum-Fra2-ChIP-Seq(GSE43429)/Homer	GGATGACTCATC	1e-6	-1.406e+01	0.0000	34.0	4.57%	844.5	1.76%
Fra1(bZIP)/BT549-Fra1-ChIP-Seq(GSE46166)/Homer	NNATGASTCATH	1e-6	-1.402e+01	0.0000	39.0	5.24%	1046.9	2.18%
AP-1(bZIP)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	VTGACTCATC	1e-6	-1.388e+01	0.0000	49.0	6.59%	1478.3	3.08%
JunB(bZIP)/DendriticCells-Junb-ChIP-Seq(GSE36099)/Homer	RATGASTCAT	1e-5	-1.368e+01	0.0000	38.0	5.11%	1020.3	2.13%
Atf3(bZIP)/GBM-ATF3-ChIP-Seq(GSE33912)/Homer	DATGASTCATHN	1e-5	-1.280e+01	0.0000	43.0	5.78%	1273.2	2.65%
Fosl2(bZIP)/3T3L1-Fosl2-ChIP-Seq(GSE56872)/Homer	NATGASTCABNN	1e-5	-1.263e+01	0.0000	24.0	3.23%	517.3	1.08%
Foxh1(Forkhead)/hESC-FOXH1-ChIP-Seq(GSE29422)/Homer	NNTGTGGATTSS	1e-5	-1.191e+01	0.0001	49.0	6.59%	1590.8	3.32%
Eomes(T-box)/H9-Eomes-ChIP-Seq(GSE26097)/Homer	ATTAACACCT	1e-5	-1.173e+01	0.0001	131.0	17.61%	5804.9	12.10%
Zfp281(Zf)/ES-Zfp281-ChIP-Seq(GSE81042)/Homer	CCCCTCCCCCAC	1e-5	-1.154e+01	0.0001	14.0	1.88%	214.5	0.45%
BATF(bZIP)/Th17-BATF-ChIP-Seq(GSE39756)/Homer	DATGASTCAT	1e-4	-1.142e+01	0.0001	41.0	5.51%	1259.9	2.63%
Tcf4(HMG)/Hct116-Tcf4-ChIP-Seq(SRA012054)/Homer	ASATCAAAGGVA	1e-4	-1.076e+01	0.0001	35.0	4.70%	1032.6	2.15%
Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer	ASWTCAAAGG	1e-4	-1.050e+01	0.0002	24.0	3.23%	590.1	1.23%
FOXP1(Forkhead)/H9-FOXP1-ChIP-Seq(GSE31006)/Homer	NYYTGTTTACHN	1e-4	-9.305e+00	0.0006	33.0	4.44%	1022.0	2.13%
Ptf1a(bHLH)/Panc1-Ptf1a-ChIP-Seq(GSE47459)/Homer	ACAGCTGTTN	1e-3	-8.497e+00	0.0014	125.0	16.80%	5896.4	12.30%
EWS:ERG-fusion(ETS)/CADO_ES1-EWS:ERG-ChIP-Seq(SRA014231)/Homer	ATTTCCTGTN	1e-3	-8.065e+00	0.0020	51.0	6.85%	1965.4	4.10%
Foxo1(Forkhead)/RAW-Foxo1-ChIP-Seq(Fan_et_al.)/Homer	CTGTTTAC	1e-3	-7.923e+00	0.0023	109.0	14.65%	5081.4	10.60%
E2A(bHLH),near_PU.1/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	NVCACCTGBN	1e-3	-7.767e+00	0.0027	66.0	8.87%	2764.2	5.76%
Bach2(bZIP)/OCILy7-Bach2-ChIP-Seq(GSE44420)/Homer	TGCTGAGTCA	1e-3	-7.754e+00	0.0027	15.0	2.02%	345.7	0.72%
EBF1(EBF)/Near-E2A-ChIP-Seq(GSE21512)/Homer	GTCCCCWGGGGA	1e-3	-7.349e+00	0.0039	47.0	6.32%	1827.4	3.81%
Etv2(ETS)/ES-ER71-ChIP-Seq(GSE59402)/Homer(0.967)	NNAYTTCCTGHN	1e-3	-7.228e+00	0.0043	52.0	6.99%	2092.3	4.36%
ETS1(ETS)/Jurkat-ETS1-ChIP-Seq(GSE17954)/Homer	ACAGGAAGTG	1e-3	-6.994e+00	0.0054	55.0	7.39%	2270.6	4.73%
Fli1(ETS)/CD8-FLI-ChIP-Seq(GSE20898)/Homer	NRYTTCCGGH	1e-2	-6.860e+00	0.0061	56.0	7.53%	2336.1	4.87%
Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	RGCCATTAAC	1e-2	-6.835e+00	0.0061	237.0	31.85%	12817.5	26.73%
Nrf2(bZIP)/Lymphoblast-Nrf2-ChIP-Seq(GSE37589)/Homer	HTGCTGAGTCAT	1e-2	-6.806e+00	0.0062	6.0	0.81%	73.6	0.15%
E2A(bHLH)/proBcell-E2A-ChIP-Seq(GSE21978)/Homer	DNRCAGCTGY	1e-2	-6.754e+00	0.0064	66.0	8.87%	2877.0	6.00%
Bach1(bZIP)/K562-Bach1-ChIP-Seq(GSE31477)/Homer	AWWNTGCTGAGTCAT	1e-2	-6.588e+00	0.0075	7.0	0.94%	104.6	0.22%
Tbet(T-box)/CD8-Tbet-ChIP-Seq(GSE33802)/Homer	AGGTGTGAAM	1e-2	-6.573e+00	0.0075	59.0	7.93%	2525.0	5.27%
HEB(bHLH)/mES-Heb-ChIP-Seq(GSE53233)/Homer	VCAGCTGBNN	1e-2	-6.218e+00	0.0105	82.0	11.02%	3820.2	7.97%
EWS:FLI1-fusion(ETS)/SK_N_MC-EWS:FLI1-ChIP-Seq(SRA014231)/Homer	VACAGGAAAT	1e-2	-6.015e+00	0.0127	33.0	4.44%	1243.3	2.59%
Maz(Zf)/HepG2-Maz-ChIP-Seq(GSE31477)/Homer	GGGGGGGG	1e-2	-5.866e+00	0.0145	44.0	5.91%	1814.4	3.78%
NF-E2(bZIP)/K562-NFE2-ChIP-Seq(GSE31477)/Homer	GATGACTCAGCA	1e-2	-5.823e+00	0.0150	6.0	0.81%	89.3	0.19%
ETV1(ETS)/GIST48-ETV1-ChIP-Seq(GSE22441)/Homer	AACCGGAAGT	1e-2	-5.615e+00	0.0182	64.0	8.60%	2911.1	6.07%
SPDEF(ETS)/VCaP-SPDEF-ChIP-Seq(SRA014231)/Homer	ASWTCCTGBT	1e-2	-5.421e+00	0.0218	53.0	7.12%	2339.5	4.88%
ERG(ETS)/VCaP-ERG-ChIP-Seq(GSE14097)/Homer	ACAGGAAGTG	1e-2	-5.330e+00	0.0235	80.0	10.75%	3841.7	8.01%
HLF(bZIP)/HSC-HLF.Flag-ChIP-Seq(GSE69817)/Homer	RTTATGYAAB	1e-2	-5.227e+00	0.0257	51.0	6.85%	2255.1	4.70%
MafK(bZIP)/C2C12-MafK-ChIP-Seq(GSE36030)/Homer	GCTGASTCAGCA	1e-2	-4.929e+00	0.0342	12.0	1.61%	336.6	0.70%
Tbx20(T-box)/Heart-Tbx20-ChIP-Seq(GSE29636)/Homer	GGTGYTGACAGS	1e-2	-4.908e+00	0.0345	15.0	2.02%	467.3	0.97%
AP-2alpha(AP2)/Hela-AP2alpha-ChIP-Seq(GSE31477)/Homer	ATGCCCTGAGGC	1e-2	-4.878e+00	0.0351	30.0	4.03%	1191.0	2.48%
FOXK2(Forkhead)/U2OS-FOXK2-ChIP-Seq(E-MTAB-2204)/Homer	SCHTGTTTACAT	1e-2	-4.837e+00	0.0361	39.0	5.24%	1661.7	3.46%
SCL(bHLH)/HPC7-Scl-ChIP-Seq(GSE13511)/Homer	AVCAGCTG	1e-2	-4.768e+00	0.0382	221.0	29.70%	12354.7	25.76%
CHR(?)/Hela-CellCycle-Expression/Homer	SRGTTTCAAA	1e-2	-4.700e+00	0.0404	43.0	5.78%	1889.2	3.94%
Tcf12(bHLH)/GM12878-Tcf12-ChIP-Seq(GSE32465)/Homer	VCAGCTGYTG	1e-1	-4.591e+00	0.0445	44.0	5.91%	1956.2	4.08%
TCFL2(HMG)/K562-TCF7L2-ChIP-Seq(GSE29196)/Homer	ACWTCAAAGG	1e-1	-4.459e+00	0.0501	7.0	0.94%	155.2	0.32%
Atf2(bZIP)/3T3L1-Atf2-ChIP-Seq(GSE56872)/Homer	NRRTGACGTCAT	1e-1	-4.454e+00	0.0501	15.0	2.02%	493.8	1.03%
OCT:OCT(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer	ATGAATATTCATGAG	1e-1	-4.343e+00	0.0550	2.0	0.27%	11.4	0.02%
Lhx2(Homeobox)/HFSC-Lhx2-ChIP-Seq(GSE48068)/Homer	TAATTAGN	1e-1	-4.294e+00	0.0571	69.0	9.27%	3387.8	7.06%
Brn2(POU,Homeobox)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer	ATGAATATTC	1e-1	-4.110e+00	0.0679	10.0	1.34%	289.1	0.60%
ZNF317(Zf)/HEK293-ZNF317.GFP-ChIP-Seq(GSE58341)/Homer	GTCWGCTGTYYCTCT	1e-1	-4.064e+00	0.0703	7.0	0.94%	168.9	0.35%
Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer	CTGTCTGG	1e-1	-3.929e+00	0.0795	61.0	8.20%	2994.6	6.24%
GABPA(ETS)/Jurkat-GABPa-ChIP-Seq(GSE17954)/Homer	RACCGGAAGT	1e-1	-3.787e+00	0.0907	39.0	5.24%	1787.7	3.73%
MafB(bZIP)/BMM-Mafb-ChIP-Seq(GSE75722)/Homer	WNTGCTGASTCAGCANWTTY	1e-1	-3.633e+00	0.1046	20.0	2.69%	796.4	1.66%
Ets1-distal(ETS)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer	MACAGGAAGT	1e-1	-3.490e+00	0.1194	17.0	2.28%	657.4	1.37%
Nur77(NR)/K562-NR4A1-ChIP-Seq(GSE31363)/Homer	TGACCTTTNCNT	1e-1	-3.484e+00	0.1194	11.0	1.48%	367.4	0.77%
JunD(bZIP)/K562-JunD-ChIP-Seq/Homer	ATGACGTCATCN	1e-1	-3.478e+00	0.1194	5.0	0.67%	111.3	0.23%
AP-2gamma(AP2)/MCF7-TFAP2C-ChIP-Seq(GSE21234)/Homer	SCCTSAGGSCAW	1e-1	-3.418e+00	0.1243	36.0	4.84%	1672.4	3.49%
ELF3(ETS)/PDAC-ELF3-ChIP-Seq(GSE64557)/Homer	ANCAGGAAGT	1e-1	-3.393e+00	0.1262	38.0	5.11%	1786.7	3.73%
Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer	VBSYGTCTGG	1e-1	-3.389e+00	0.1262	60.0	8.06%	3032.5	6.32%
c-Jun-CRE(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	ATGACGTCATCY	1e-1	-3.234e+00	0.1449	13.0	1.75%	479.9	1.00%
ETS(ETS)/Promoter/Homer	AACCGGAAGT	1e-1	-3.207e+00	0.1474	13.0	1.75%	481.5	1.00%
MafA(bZIP)/Islet-MafA-ChIP-Seq(GSE30298)/Homer	TGCTGACTCA	1e-1	-3.193e+00	0.1479	35.0	4.70%	1648.2	3.44%
STAT5(Stat)/mCD4+-Stat5-ChIP-Seq(GSE12346)/Homer	RTTTCTNAGAAA	1e-1	-3.148e+00	0.1533	20.0	2.69%	842.6	1.76%
Tcf21(bHLH)/ArterySmoothMuscle-Tcf21-ChIP-Seq(GSE61369)/Homer	NAACAGCTGG	1e-1	-3.065e+00	0.1649	40.0	5.38%	1947.5	4.06%
PRDM14(Zf)/H1-PRDM14-ChIP-Seq(GSE22767)/Homer	RGGTCTCTAACY	1e-1	-3.059e+00	0.1649	14.0	1.88%	542.2	1.13%
ZEB1(Zf)/PDAC-ZEB1-ChIP-Seq(GSE64557)/Homer	VCAGGTRDRY	1e-1	-3.033e+00	0.1670	69.0	9.27%	3627.0	7.56%
Lhx1(Homeobox)/EmbryoCarcinoma-Lhx1-ChIP-Seq(GSE70957)/Homer	NNYTAATTAR	1e-1	-2.857e+00	0.1973	70.0	9.41%	3726.0	7.77%
Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer	TWGTCTGV	1e-1	-2.854e+00	0.1973	111.0	14.92%	6183.9	12.90%
ZBTB18(Zf)/HEK293-ZBTB18.GFP-ChIP-Seq(GSE58341)/Homer	AACATCTGGA	1e-1	-2.806e+00	0.2037	23.0	3.09%	1040.8	2.17%
Tbx5(T-box)/HL1-Tbx5.biotin-ChIP-Seq(GSE21529)/Homer	AGGTGTCA	1e-1	-2.771e+00	0.2090	133.0	17.88%	7549.6	15.74%
ETS:RUNX(ETS,Runt)/Jurkat-RUNX1-ChIP-Seq(GSE17954)/Homer	RCAGGATGTGGT	1e-1	-2.717e+00	0.2186	4.0	0.54%	98.0	0.20%
STAT6(Stat)/CD4-Stat6-ChIP-Seq(GSE22104)/Homer	ABTTCYYRRGAA	1e-1	-2.653e+00	0.2311	31.0	4.17%	1504.1	3.14%
Atf7(bZIP)/3T3L1-Atf7-ChIP-Seq(GSE56872)/Homer	NGRTGACGTCAY	1e-1	-2.623e+00	0.2359	17.0	2.28%	738.6	1.54%
Ascl1(bHLH)/NeuralTubes-Ascl1-ChIP-Seq(GSE55840)/Homer	NNVVCAGCTGBN	1e-1	-2.607e+00	0.2376	58.0	7.80%	3073.2	6.41%
GATA:SCL(Zf,bHLH)/Ter119-SCL-ChIP-Seq(GSE18720)/Homer	CRGCTGBNGNSNNSAGATAA	1e-1	-2.605e+00	0.2376	6.0	0.81%	187.9	0.39%
Lhx3(Homeobox)/Neuron-Lhx3-ChIP-Seq(GSE31456)/Homer	ADBTAATTAR	1e-1	-2.564e+00	0.2437	98.0	13.17%	5479.1	11.43%
MyoG(bHLH)/C2C12-MyoG-ChIP-Seq(GSE36024)/Homer	AACAGCTG	1e-1	-2.544e+00	0.2466	43.0	5.78%	2209.3	4.61%
Slug(Zf)/Mesoderm-Snai2-ChIP-Seq(GSE61475)/Homer	SNGCACCTGCHS	1e-1	-2.498e+00	0.2559	21.0	2.82%	969.8	2.02%
Nkx6.1(Homeobox)/Islet-Nkx6.1-ChIP-Seq(GSE40975)/Homer	GKTAATGR	1e-1	-2.461e+00	0.2634	157.0	21.10%	9136.6	19.05%
MITF(bHLH)/MastCells-MITF-ChIP-Seq(GSE48085)/Homer	RTCATGTGAC	1e-1	-2.428e+00	0.2699	34.0	4.57%	1711.0	3.57%
OCT:OCT-short(POU,Homeobox)/NPC-OCT6-ChIP-Seq(GSE43916)/Homer	ATGCATWATGCATRW	1e-1	-2.415e+00	0.2711	43.0	5.78%	2234.9	4.66%
RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer	NWAACCACADNN	1e-1	-2.414e+00	0.2711	33.0	4.44%	1656.5	3.45%
GATA3(Zf),DR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATGKDGAGATAAG	1e-1	-2.322e+00	0.2927	5.0	0.67%	156.8	0.33%
RUNX-AML(Runt)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer	GCTGTGGTTW	1e0	-2.303e+00	0.2960	28.0	3.76%	1389.9	2.90%
ELF5(ETS)/T47D-ELF5-ChIP-Seq(GSE30407)/Homer	ACVAGGAAGT	1e0	-2.266e+00	0.3046	33.0	4.44%	1682.7	3.51%
GRHL2(CP2)/HBE-GRHL2-ChIP-Seq(GSE46194)/Homer	AAACYKGTTWDACMRGTTTB	1e0	-2.222e+00	0.3157	16.0	2.15%	729.0	1.52%
NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer	WGGGGATTTCCC	1e0	-2.163e+00	0.3321	21.0	2.82%	1014.5	2.12%
Hoxb4(Homeobox)/ES-Hoxb4-ChIP-Seq(GSE34014)/Homer	TGATTRATGGCY	1e0	-2.095e+00	0.3527	10.0	1.34%	420.9	0.88%
bZIP:IRF(bZIP,IRF)/Th17-BatF-ChIP-Seq(GSE39756)/Homer	NAGTTTCABTHTGACTNW	1e0	-2.050e+00	0.3662	20.0	2.69%	974.5	2.03%
Bapx1(Homeobox)/VertebralCol-Bapx1-ChIP-Seq(GSE36672)/Homer	TTRAGTGSYK	1e0	-2.048e+00	0.3662	82.0	11.02%	4662.3	9.72%
ELF1(ETS)/Jurkat-ELF1-ChIP-Seq(SRA014231)/Homer	AVCCGGAAGT	1e0	-2.034e+00	0.3662	16.0	2.15%	752.4	1.57%
ZNF264(Zf)/HEK293-ZNF264.GFP-ChIP-Seq(GSE58341)/Homer	RGGGCACTAACY	1e0	-2.013e+00	0.3711	22.0	2.96%	1093.5	2.28%
Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer	RSCACTYRAG	1e0	-1.975e+00	0.3825	110.0	14.78%	6407.7	13.36%
EHF(ETS)/LoVo-EHF-ChIP-Seq(GSE49402)/Homer	AVCAGGAAGT	1e0	-1.937e+00	0.3945	58.0	7.80%	3237.3	6.75%
RUNX(Runt)/HPC7-Runx1-ChIP-Seq(GSE22178)/Homer	SAAACCACAG	1e0	-1.936e+00	0.3945	27.0	3.63%	1394.4	2.91%
Twist(bHLH)/HMLE-TWIST1-ChIP-Seq(Chang_et_al)/Homer	VCAKCTGGNNNCCAGMTGBN	1e0	-1.924e+00	0.3945	5.0	0.67%	178.6	0.37%
Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	KGTTGCCATGGCAA	1e0	-1.893e+00	0.4031	8.0	1.08%	333.2	0.69%
LRF(Zf)/Erythroblasts-ZBTB7A-ChIP-Seq(GSE74977)/Homer	AAGACCCYYN	1e0	-1.853e+00	0.4165	41.0	5.51%	2237.9	4.67%
EBF(EBF)/proBcell-EBF-ChIP-Seq(GSE21978)/Homer	DGTCCCYRGGGA	1e0	-1.815e+00	0.4297	8.0	1.08%	340.5	0.71%
ARE(NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	RGRACASNSTGTYCYB	1e0	-1.801e+00	0.4324	10.0	1.34%	449.4	0.94%
Myf5(bHLH)/GM-Myf5-ChIP-Seq(GSE24852)/Homer	BAACAGCTGT	1e0	-1.774e+00	0.4410	28.0	3.76%	1483.7	3.09%
ZNF16(Zf)/HEK293-ZNF16.GFP-ChIP-Seq(GSE58341)/Homer	MACCTTCYATGGCTCCCTAKTGCCY	1e0	-1.773e+00	0.4410	1.0	0.13%	12.4	0.03%
NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer	GCCATCTGTT	1e0	-1.769e+00	0.4410	30.0	4.03%	1602.7	3.34%
Zfp809(Zf)/ES-Zfp809-ChIP-Seq(GSE70799)/Homer	GGGGCTYGKCTGGGA	1e0	-1.768e+00	0.4410	6.0	0.81%	239.5	0.50%
Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer	CTAATKGV	1e0	-1.753e+00	0.4410	100.0	13.44%	5872.7	12.25%
Oct4:Sox17(POU,Homeobox,HMG)/F9-Sox17-ChIP-Seq(GSE44553)/Homer	CCATTGTATGCAAAT	1e0	-1.729e+00	0.4457	8.0	1.08%	348.4	0.73%
Ap4(bHLH)/AML-Tfap4-ChIP-Seq(GSE45738)/Homer	NAHCAGCTGD	1e0	-1.641e+00	0.4832	46.0	6.18%	2592.4	5.41%
ETS:E-box(ETS,bHLH)/HPC7-Scl-ChIP-Seq(GSE22178)/Homer	AGGAARCAGCTG	1e0	-1.600e+00	0.5002	5.0	0.67%	200.3	0.42%
Elk1(ETS)/Hela-Elk1-ChIP-Seq(GSE31477)/Homer	HACTTCCGGY	1e0	-1.564e+00	0.5111	17.0	2.28%	877.4	1.83%
Elk4(ETS)/Hela-Elk4-ChIP-Seq(GSE31477)/Homer	NRYTTCCGGY	1e0	-1.564e+00	0.5111	17.0	2.28%	877.2	1.83%
RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer	AGGTCAAGGTCA	1e0	-1.549e+00	0.5154	4.0	0.54%	152.2	0.32%
Olig2(bHLH)/Neuron-Olig2-ChIP-Seq(GSE30882)/Homer	RCCATMTGTT	1e0	-1.541e+00	0.5162	78.0	10.48%	4589.7	9.57%
Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer	CAAAGGTCAG	1e0	-1.536e+00	0.5162	69.0	9.27%	4034.7	8.41%
RFX(HTH)/K562-RFX3-ChIP-Seq(SRA012198)/Homer	CGGTTGCCATGGCAAC	1e0	-1.532e+00	0.5162	3.0	0.40%	103.6	0.22%
ZNF711(Zf)/SHSY5Y-ZNF711-ChIP-Seq(GSE20673)/Homer	AGGCCTAG	1e0	-1.525e+00	0.5162	49.0	6.59%	2808.8	5.86%
NF1:FOXA1(CTF,Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WNTGTTTRYTTTGGCA	1e0	-1.514e+00	0.5167	3.0	0.40%	104.4	0.22%
Pitx1:Ebox(Homeobox,bHLH)/Hindlimb-Pitx1-ChIP-Seq(GSE41591)/Homer	YTAATTRAWWCCAGATGT	1e0	-1.505e+00	0.5179	10.0	1.34%	483.4	1.01%
NF1(CTF)/LNCAP-NF1-ChIP-Seq(Unpublished)/Homer	CYTGGCABNSTGCCAR	1e0	-1.496e+00	0.5193	11.0	1.48%	541.6	1.13%
Egr1(Zf)/K562-Egr1-ChIP-Seq(GSE32465)/Homer	TGCGTGGGYG	1e0	-1.484e+00	0.5223	16.0	2.15%	832.3	1.74%
Hand2(bHLH)/Mesoderm-Hand2-ChIP-Seq(GSE61475)/Homer	TGACANARRCCAGRC	1e0	-1.470e+00	0.5263	17.0	2.28%	893.1	1.86%
BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer	CNNBRGCGCCCCCTGSTGGC	1e0	-1.462e+00	0.5275	4.0	0.54%	159.0	0.33%
Gfi1b(Zf)/HPC7-Gfi1b-ChIP-Seq(GSE22178)/Homer	MAATCACTGC	1e0	-1.413e+00	0.5502	28.0	3.76%	1561.3	3.26%
X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	GGTTGCCATGGCAA	1e0	-1.389e+00	0.5603	5.0	0.67%	217.3	0.45%
Bcl6(Zf)/Liver-Bcl6-ChIP-Seq(GSE31578)/Homer	NNNCTTTCCAGGAAA	1e0	-1.386e+00	0.5603	58.0	7.80%	3408.0	7.11%
CArG(MADS)/PUER-Srf-ChIP-Seq(Sullivan_et_al.)/Homer	CCATATATGGNM	1e0	-1.327e+00	0.5890	13.0	1.75%	682.4	1.42%
KLF14(Zf)/HEK293-KLF14.GFP-ChIP-Seq(GSE58341)/Homer	RGKGGGCGKGGC	1e0	-1.326e+00	0.5890	40.0	5.38%	2316.6	4.83%
Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer	RRSCACTYAA	1e0	-1.323e+00	0.5890	83.0	11.16%	4988.8	10.40%
PR(NR)/T47D-PR-ChIP-Seq(GSE31130)/Homer	VAGRACAKNCTGTBC	1e0	-1.314e+00	0.5890	85.0	11.42%	5117.9	10.67%
GFY(?)/Promoter/Homer	ACTACAATTCCC	1e0	-1.312e+00	0.5890	3.0	0.40%	116.4	0.24%
Six1(Homeobox)/Myoblast-Six1-ChIP-Chip(GSE20150)/Homer	GKVTCADRTTWC	1e0	-1.295e+00	0.5897	10.0	1.34%	511.8	1.07%
DMRT1(DM)/Testis-DMRT1-ChIP-Seq(GSE64892)/Homer	TWGHWACAWTGTWDC	1e0	-1.279e+00	0.5962	11.0	1.48%	572.3	1.19%
Sp5(Zf)/mES-Sp5.Flag-ChIP-Seq(GSE72989)/Homer	RGKGGGCGGAGC	1e0	-1.227e+00	0.6243	20.0	2.69%	1120.1	2.34%
FXR(NR),IR1/Liver-FXR-ChIP-Seq(Chong_et_al.)/Homer	AGGTCANTGACCTB	1e0	-1.208e+00	0.6320	11.0	1.48%	583.5	1.22%
Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	CTGGCAGSCTGCCA	1e0	-1.199e+00	0.6343	12.0	1.61%	644.2	1.34%
NFkB-p50,p52(RHD)/Monocyte-p50-ChIP-Chip(Schreiber_et_al.)/Homer	GGGGGAATCCCC	1e0	-1.168e+00	0.6508	3.0	0.40%	126.7	0.26%
GRE(NR),IR3/A549-GR-ChIP-Seq(GSE32465)/Homer	NRGVACABNVTGTYCY	1e0	-1.158e+00	0.6535	5.0	0.67%	239.5	0.50%
E-box(bHLH)/Promoter/Homer	SSGGTCACGTGA	1e0	-1.144e+00	0.6589	2.0	0.27%	74.1	0.15%
Znf263(Zf)/K562-Znf263-ChIP-Seq(GSE31477)/Homer	CVGTSCTCCC	1e0	-1.141e+00	0.6589	58.0	7.80%	3499.8	7.30%
Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo_et_al.)/Homer	TBGCACGCAA	1e0	-1.117e+00	0.6694	19.0	2.55%	1084.3	2.26%
Stat3(Stat)/mES-Stat3-ChIP-Seq(GSE11431)/Homer	CTTCCGGGAA	1e0	-1.112e+00	0.6694	19.0	2.55%	1085.9	2.26%
RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer	AAYTAGGTCA	1e0	-1.111e+00	0.6694	5.0	0.67%	244.1	0.51%
c-Myc(bHLH)/LNCAP-cMyc-ChIP-Seq(Unpublished)/Homer	VCCACGTG	1e0	-1.094e+00	0.6733	10.0	1.34%	542.0	1.13%
ZFX(Zf)/mES-Zfx-ChIP-Seq(GSE11431)/Homer	AGGCCTRG	1e0	-1.080e+00	0.6790	36.0	4.84%	2146.0	4.47%
TR4(NR),DR1/Hela-TR4-ChIP-Seq(GSE24685)/Homer	GAGGTCAAAGGTCA	1e0	-1.041e+00	0.7023	3.0	0.40%	136.1	0.28%
STAT6(Stat)/Macrophage-Stat6-ChIP-Seq(GSE38377)/Homer	TTCCKNAGAA	1e0	-1.037e+00	0.7023	26.0	3.49%	1537.6	3.21%
Rbpj1(?)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	HTTTCCCASG	1e0	-1.029e+00	0.7031	58.0	7.80%	3546.2	7.39%
RARg(NR)/ES-RARg-ChIP-Seq(GSE30538)/Homer	AGGTCAAGGTCA	1e0	-1.015e+00	0.7092	1.0	0.13%	29.5	0.06%
NFkB-p65-Rel(RHD)/ThioMac-LPS-Expression(GSE23622)/Homer	GGAAATTCCC	1e0	-1.006e+00	0.7118	3.0	0.40%	139.3	0.29%
PAX3:FKHR-fusion(Paired,Homeobox)/Rh4-PAX3:FKHR-ChIP-Seq(GSE19063)/Homer	ACCRTGACTAATTNN	1e0	-1.005e+00	0.7118	8.0	1.08%	436.5	0.91%
CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer	AYAGTGCCMYCTRGTGGCCA	1e0	-9.834e-01	0.7203	3.0	0.40%	141.1	0.29%
Barx1(Homeobox)/Stomach-Barx1.3xFlag-ChIP-Seq(GSE69483)/Homer	AAACMATTAN	1e0	-9.613e-01	0.7326	25.0	3.36%	1497.3	3.12%
Nkx2.2(Homeobox)/NPC-Nkx2.2-ChIP-Seq(GSE61673)/Homer	BTBRAGTGSN	1e0	-9.022e-01	0.7731	68.0	9.14%	4240.7	8.84%
ZNF136(Zf)/HEK293-ZNF136.GFP-ChIP-Seq(GSE58341)/Homer	YTKGATAHAGTATTCTWGGTNGGCA	1e0	-8.985e-01	0.7731	3.0	0.40%	149.6	0.31%
ZNF165(Zf)/WHIM12-ZNF165-ChIP-Seq(GSE65937)/Homer	AAGGKGRCGCAGGCA	1e0	-8.985e-01	0.7731	3.0	0.40%	149.2	0.31%
NFY(CCAAT)/Promoter/Homer	RGCCAATSRG	1e0	-8.971e-01	0.7731	26.0	3.49%	1580.9	3.30%
Atoh1(bHLH)/Cerebellum-Atoh1-ChIP-Seq(GSE22111)/Homer	VNRVCAGCTGGY	1e0	-8.950e-01	0.7731	35.0	4.70%	2149.3	4.48%
ZNF692(Zf)/HEK293-ZNF692.GFP-ChIP-Seq(GSE58341)/Homer	GTGGGCCCCA	1e0	-8.885e-01	0.7731	3.0	0.40%	150.0	0.31%
MafF(bZIP)/HepG2-MafF-ChIP-Seq(GSE31477)/Homer	HWWGTCAGCAWWTTT	1e0	-8.526e-01	0.7877	12.0	1.61%	712.5	1.49%
PPARE(NR),DR1/3T3L1-Pparg-ChIP-Seq(GSE13511)/Homer	TGACCTTTGCCCCA	1e0	-8.396e-01	0.7940	30.0	4.03%	1853.0	3.86%
TFE3(bHLH)/MEF-TFE3-ChIP-Seq(GSE75757)/Homer	GTCACGTGACYV	1e0	-8.357e-01	0.7940	2.0	0.27%	95.8	0.20%
Reverb(NR),DR2/RAW-Reverba.biotin-ChIP-Seq(GSE45914)/Homer	GTRGGTCASTGGGTCA	1e0	-8.214e-01	0.8004	3.0	0.40%	157.7	0.33%
HNF4a(NR),DR1/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer	CARRGKBCAAAGTYCA	1e0	-8.105e-01	0.8052	13.0	1.75%	785.9	1.64%
CEBP:CEBP(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	NTNATGCAAYMNNHTGMAAY	1e0	-7.892e-01	0.8185	7.0	0.94%	411.7	0.86%
NeuroG2(bHLH)/Fibroblast-NeuroG2-ChIP-Seq(GSE75910)/Homer	ACCATCTGTT	1e0	-7.787e-01	0.8230	54.0	7.26%	3411.6	7.11%
PU.1-IRF(ETS:IRF)/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	MGGAAGTGAAAC	1e0	-7.728e-01	0.8238	52.0	6.99%	3286.9	6.85%
ZNF382(Zf)/HEK293-ZNF382.GFP-ChIP-Seq(GSE58341)/Homer	GNCTGTASTRNTGBCTCHTT	1e0	-7.711e-01	0.8238	1.0	0.13%	40.0	0.08%
ZSCAN22(Zf)/HEK293-ZSCAN22.GFP-ChIP-Seq(GSE58341)/Homer	SMCAGTCWGAKGGAGGAGGC	1e0	-7.667e-01	0.8238	2.0	0.27%	101.5	0.21%
HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson_et_al.)/Homer	GYCATCMATCAT	1e0	-7.374e-01	0.8411	4.0	0.54%	230.3	0.48%
Atf4(bZIP)/MEF-Atf4-ChIP-Seq(GSE35681)/Homer	MTGATGCAAT	1e0	-6.959e-01	0.8726	12.0	1.61%	751.1	1.57%
Six2(Homeobox)/NephronProgenitor-Six2-ChIP-Seq(GSE39837)/Homer	GWAAYHTGAKMC	1e0	-6.699e-01	0.8913	36.0	4.84%	2309.4	4.82%
Tgif1(Homeobox)/mES-Tgif1-ChIP-Seq(GSE55404)/Homer	YTGWCADY	1e0	-6.193e-01	0.9331	136.0	18.28%	8806.2	18.36%
TATA-Box(TBP)/Promoter/Homer	CCTTTTAWAGSC	1e0	-6.061e-01	0.9410	52.0	6.99%	3381.0	7.05%
Pax7(Paired,Homeobox),longest/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	NTAATTDGCYAATTANNWWD	1e0	-6.035e-01	0.9410	1.0	0.13%	51.2	0.11%
THRa(NR)/C17.2-THRa-ChIP-Seq(GSE38347)/Homer	GGTCANYTGAGGWCA	1e0	-6.021e-01	0.9410	10.0	1.34%	647.5	1.35%
GATA(Zf),IR3/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NNNNNBAGATAWYATCTVHN	1e0	-5.937e-01	0.9410	4.0	0.54%	253.9	0.53%
CRE(bZIP)/Promoter/Homer	CSGTGACGTCAC	1e0	-5.881e-01	0.9410	4.0	0.54%	254.7	0.53%
Meis1(Homeobox)/MastCells-Meis1-ChIP-Seq(GSE48085)/Homer	VGCTGWCAVB	1e0	-5.733e-01	0.9499	57.0	7.66%	3726.9	7.77%
ZNF416(Zf)/HEK293-ZNF416.GFP-ChIP-Seq(GSE58341)/Homer	WDNCTGGGCA	1e0	-5.687e-01	0.9499	40.0	5.38%	2622.1	5.47%
HRE(HSF)/Striatum-HSF1-ChIP-Seq(GSE38000)/Homer	TTCTAGAABNTTCTA	1e0	-5.639e-01	0.9500	7.0	0.94%	459.2	0.96%
Unknown(Homeobox)/Limb-p300-ChIP-Seq/Homer	SSCMATWAAA	1e0	-5.575e-01	0.9518	28.0	3.76%	1844.0	3.85%
HOXB13(Homeobox)/ProstateTumor-HOXB13-ChIP-Seq(GSE56288)/Homer	TTTTATKRGG	1e0	-5.427e-01	0.9616	42.0	5.65%	2768.9	5.77%
PU.1(ETS)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	AGAGGAAGTG	1e0	-5.425e-01	0.9616	16.0	2.15%	1062.9	2.22%
E2F6(E2F)/Hela-E2F6-ChIP-Seq(GSE31477)/Homer	GGCGGGAARN	1e0	-5.424e-01	0.9616	9.0	1.21%	598.6	1.25%
CEBP:AP1(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	DRTGTTGCAA	1e0	-5.421e-01	0.9616	32.0	4.30%	2114.2	4.41%
Rfx2(HTH)/LoVo-RFX2-ChIP-Seq(GSE49402)/Homer	GTTGCCATGGCAACM	1e0	-5.340e-01	0.9616	2.0	0.27%	127.8	0.27%
ZNF143|STAF(Zf)/CUTLL-ZNF143-ChIP-Seq(GSE29600)/Homer	ATTTCCCAGVAKSCY	1e0	-5.327e-01	0.9616	8.0	1.08%	534.9	1.12%
Atf1(bZIP)/K562-ATF1-ChIP-Seq(GSE31477)/Homer	GATGACGTCA	1e0	-5.327e-01	0.9616	18.0	2.42%	1198.3	2.50%
PGR(NR)/EndoStromal-PGR-ChIP-Seq(GSE69539)/Homer	AAGAACATWHTGTTC	1e0	-5.221e-01	0.9616	8.0	1.08%	537.9	1.12%
LXRE(NR),DR4/RAW-LXRb.biotin-ChIP-Seq(GSE21512)/Homer	RGGTTACTANAGGTCA	1e0	-5.216e-01	0.9616	1.0	0.13%	58.7	0.12%
OCT:OCT(POU,Homeobox,IR1)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer	ATGAATWATTCATGA	1e0	-5.216e-01	0.9616	1.0	0.13%	58.4	0.12%
MyoD(bHLH)/Myotube-MyoD-ChIP-Seq(GSE21614)/Homer	RRCAGCTGYTSY	1e0	-5.049e-01	0.9616	23.0	3.09%	1541.2	3.21%
GFY-Staf(?,Zf)/Promoter/Homer	RACTACAATTCCCAGAAKGC	1e0	-5.008e-01	0.9616	1.0	0.13%	60.3	0.13%
Pax7(Paired,Homeobox),long/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCHGATTAC	1e0	-5.008e-01	0.9616	1.0	0.13%	61.0	0.13%
Mouse_Recombination_Hotspot(Zf)/Testis-DMC1-ChIP-Seq(GSE24438)/Homer	ACTYKNATTCGTGNTACTTC	1e0	-4.989e-01	0.9616	2.0	0.27%	132.6	0.28%
HIF2a(bHLH)/785_O-HIF2a-ChIP-Seq(GSE34871)/Homer	GCACGTACCC	1e0	-4.915e-01	0.9616	8.0	1.08%	546.5	1.14%
ISRE(IRF)/ThioMac-LPS-Expression(GSE23622)/Homer	AGTTTCASTTTC	1e0	-4.663e-01	0.9717	2.0	0.27%	137.3	0.29%
RXR(NR),DR1/3T3L1-RXR-ChIP-Seq(GSE13511)/Homer	TAGGGCAAAGGTCA	1e0	-4.653e-01	0.9717	32.0	4.30%	2158.4	4.50%
Egr2(Zf)/Thymocytes-Egr2-ChIP-Seq(GSE34254)/Homer	NGCGTGGGCGGR	1e0	-4.539e-01	0.9755	2.0	0.27%	139.8	0.29%
GLI3(Zf)/Limb-GLI3-ChIP-Chip(GSE11077)/Homer	CGTGGGTGGTCC	1e0	-4.419e-01	0.9831	2.0	0.27%	141.7	0.30%
IRF:BATF(IRF:bZIP)/pDC-Irf8-ChIP-Seq(GSE66899)/Homer	CTTTCANTATGACTV	1e0	-4.302e-01	0.9906	4.0	0.54%	287.0	0.60%
NRF1(NRF)/MCF7-NRF1-ChIP-Seq(Unpublished)/Homer	CTGCGCATGCGC	1e0	-4.194e-01	0.9971	1.0	0.13%	69.6	0.15%
ZNF675(Zf)/HEK293-ZNF675.GFP-ChIP-Seq(GSE58341)/Homer	ARGAGGMCAAAATGW	1e0	-4.172e-01	0.9971	5.0	0.67%	361.8	0.75%
OCT:OCT(POU,Homeobox)/NPC-OCT6-ChIP-Seq(GSE43916)/Homer	YATGCATATRCATRT	1e0	-4.103e-01	0.9979	3.0	0.40%	220.6	0.46%
GATA(Zf),IR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NAGATWNBNATCTNN	1e0	-4.078e-01	0.9979	2.0	0.27%	148.0	0.31%
Chop(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	ATTGCATCAT	1e0	-4.005e-01	0.9995	8.0	1.08%	576.8	1.20%
CDX4(Homeobox)/ZebrafishEmbryos-Cdx4.Myc-ChIP-Seq(GSE48254)/Homer	NGYCATAAAWCH	1e0	-3.968e-01	0.9995	34.0	4.57%	2336.5	4.87%
IRF4(IRF)/GM12878-IRF4-ChIP-Seq(GSE32465)/Homer	ACTGAAACCA	1e0	-3.967e-01	0.9995	14.0	1.88%	990.4	2.07%
STAT1(Stat)/HelaS3-STAT1-ChIP-Seq(GSE12782)/Homer	NATTTCCNGGAAAT	1e0	-3.963e-01	0.9995	10.0	1.34%	716.8	1.49%
IRF2(IRF)/Erythroblas-IRF2-ChIP-Seq(GSE36985)/Homer	GAAASYGAAASY	1e0	-3.885e-01	0.9995	3.0	0.40%	225.2	0.47%
Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer	SCCTAGCAACAG	1e0	-3.842e-01	0.9995	8.0	1.08%	582.5	1.21%
Phox2a(Homeobox)/Neuron-Phox2a-ChIP-Seq(GSE31456)/Homer	YTAATYNRATTA	1e0	-3.833e-01	0.9995	16.0	2.15%	1133.6	2.36%
YY1(Zf)/Promoter/Homer	CAAGATGGCGGC	1e0	-3.812e-01	0.9995	1.0	0.13%	74.6	0.16%
ZNF669(Zf)/HEK293-ZNF669.GFP-ChIP-Seq(GSE58341)/Homer	GARTGGTCATCGCCC	1e0	-3.671e-01	1.0000	1.0	0.13%	76.1	0.16%
Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer	GYMATAAAAH	1e0	-3.658e-01	1.0000	26.0	3.49%	1821.9	3.80%
ZNF415(Zf)/HEK293-ZNF415.GFP-ChIP-Seq(GSE58341)/Homer	GRTGMTRGAGCC	1e0	-3.641e-01	1.0000	11.0	1.48%	799.0	1.67%
CLOCK(bHLH)/Liver-Clock-ChIP-Seq(GSE39860)/Homer	GHCACGTG	1e0	-3.541e-01	1.0000	12.0	1.61%	873.3	1.82%
RUNX1(Runt)/Jurkat-RUNX1-ChIP-Seq(GSE29180)/Homer	AAACCACARM	1e0	-3.464e-01	1.0000	31.0	4.17%	2172.5	4.53%
USF1(bHLH)/GM12878-Usf1-ChIP-Seq(GSE32465)/Homer	SGTCACGTGR	1e0	-3.425e-01	1.0000	9.0	1.21%	669.8	1.40%
NFAT:AP1(RHD,bZIP)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer	SARTGGAAAAWRTGAGTCAB	1e0	-3.421e-01	1.0000	5.0	0.67%	384.8	0.80%
HRE(HSF)/HepG2-HSF1-ChIP-Seq(GSE31477)/Homer	BSTTCTRGAABVTTCYAGAA	1e0	-3.406e-01	1.0000	3.0	0.40%	237.2	0.49%
DMRT6(DM)/Testis-DMRT6-ChIP-Seq(GSE60440)/Homer	YDGHTACAWTGTADC	1e0	-3.317e-01	1.0000	6.0	0.81%	461.0	0.96%
Pit1+1bp(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer	ATGCATAATTCA	1e0	-3.313e-01	1.0000	13.0	1.75%	954.9	1.99%
Sp1(Zf)/Promoter/Homer	GGCCCCGCCCCC	1e0	-3.254e-01	1.0000	2.0	0.27%	164.5	0.34%
Mef2b(MADS)/HEK293-Mef2b.V5-ChIP-Seq(GSE67450)/Homer	GCTATTTTTGGM	1e0	-3.112e-01	1.0000	31.0	4.17%	2200.3	4.59%
Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer	AGGTGHCAGACA	1e0	-3.045e-01	1.0000	4.0	0.54%	323.2	0.67%
Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer	GGCCATAAATCA	1e0	-3.021e-01	1.0000	18.0	2.42%	1318.5	2.75%
Tcfcp2l1(CP2)/mES-Tcfcp2l1-ChIP-Seq(GSE11431)/Homer	NRAACCRGTTYRAACCRGYT	1e0	-2.929e-01	1.0000	2.0	0.27%	172.7	0.36%
ZNF467(Zf)/HEK293-ZNF467.GFP-ChIP-Seq(GSE58341)/Homer	TGGGGAAGGGCM	1e0	-2.921e-01	1.0000	19.0	2.55%	1394.6	2.91%
Pknox1(Homeobox)/ES-Prep1-ChIP-Seq(GSE63282)/Homer	SCTGTCAVTCAV	1e0	-2.897e-01	1.0000	5.0	0.67%	403.1	0.84%
GRE(NR),IR3/RAW264.7-GRE-ChIP-Seq(Unpublished)/Homer	VAGRACAKWCTGTYC	1e0	-2.823e-01	1.0000	6.0	0.81%	480.1	1.00%
IRF8(IRF)/BMDM-IRF8-ChIP-Seq(GSE77884)/Homer	GRAASTGAAAST	1e0	-2.756e-01	1.0000	10.0	1.34%	773.0	1.61%
Brachyury(T-box)/Mesoendoderm-Brachyury-ChIP-exo(GSE54963)/Homer	ANTTMRCASBNNNGTGYKAAN	1e0	-2.721e-01	1.0000	7.0	0.94%	558.6	1.16%
IRF1(IRF)/PBMC-IRF1-ChIP-Seq(GSE43036)/Homer	GAAAGTGAAAGT	1e0	-2.710e-01	1.0000	4.0	0.54%	335.9	0.70%
CEBP(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	ATTGCGCAAC	1e0	-2.671e-01	1.0000	27.0	3.63%	1965.9	4.10%
bHLHE40(bHLH)/HepG2-BHLHE40-ChIP-Seq(GSE31477)/Homer	KCACGTGMCN	1e0	-2.629e-01	1.0000	5.0	0.67%	414.7	0.86%
ZNF322(Zf)/HEK293-ZNF322.GFP-ChIP-Seq(GSE58341)/Homer	GAGCCTGGTACTGWGCCTGR	1e0	-2.607e-01	1.0000	4.0	0.54%	339.5	0.71%
HIF-1b(HLH)/T47D-HIF1b-ChIP-Seq(GSE59937)/Homer	RTACGTGC	1e0	-2.595e-01	1.0000	26.0	3.49%	1903.1	3.97%
ZNF519(Zf)/HEK293-ZNF519.GFP-ChIP-Seq(GSE58341)/Homer	GAGSCCGAGC	1e0	-2.568e-01	1.0000	2.0	0.27%	182.1	0.38%
BMYB(HTH)/Hela-BMYB-ChIP-Seq(GSE27030)/Homer	NHAACBGYYV	1e0	-2.562e-01	1.0000	52.0	6.99%	3675.7	7.66%
RBPJ:Ebox(?,bHLH)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	GGGRAARRGRMCAGMTG	1e0	-2.547e-01	1.0000	8.0	1.08%	640.0	1.33%
KLF3(Zf)/MEF-Klf3-ChIP-Seq(GSE44748)/Homer	NRGCCCCRCCCHBNN	1e0	-2.538e-01	1.0000	5.0	0.67%	418.9	0.87%
HNF6(Homeobox)/Liver-Hnf6-ChIP-Seq(ERP000394)/Homer	NTATYGATCH	1e0	-2.509e-01	1.0000	18.0	2.42%	1355.7	2.83%
Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer	BTCAAGGTCA	1e0	-2.389e-01	1.0000	11.0	1.48%	867.1	1.81%
Srebp1a(bHLH)/HepG2-Srebp1a-ChIP-Seq(GSE31477)/Homer	RTCACSCCAY	1e0	-2.387e-01	1.0000	4.0	0.54%	348.4	0.73%
Mef2d(MADS)/Retina-Mef2d-ChIP-Seq(GSE61391)/Homer	GCTATTTTTAGC	1e0	-2.321e-01	1.0000	5.0	0.67%	428.5	0.89%
Klf9(Zf)/GBM-Klf9-ChIP-Seq(GSE62211)/Homer	GCCACRCCCACY	1e0	-2.318e-01	1.0000	4.0	0.54%	351.4	0.73%
Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer	SCTGTCAMTCAN	1e0	-2.260e-01	1.0000	5.0	0.67%	431.6	0.90%
Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer	GTCATGCHTGRCTGS	1e0	-2.180e-01	1.0000	5.0	0.67%	435.6	0.91%
n-Myc(bHLH)/mES-nMyc-ChIP-Seq(GSE11431)/Homer	VRCCACGTGG	1e0	-2.138e-01	1.0000	14.0	1.88%	1101.3	2.30%
Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer	YCATYAATCA	1e0	-2.128e-01	1.0000	35.0	4.70%	2571.9	5.36%
NPAS2(bHLH)/Liver-NPAS2-ChIP-Seq(GSE39860)/Homer	KCCACGTGAC	1e0	-2.094e-01	1.0000	28.0	3.76%	2091.1	4.36%
DUX4(Homeobox)/Myoblasts-DUX4.V5-ChIP-Seq(GSE75791)/Homer	NWTAAYCYAATCAWN	1e0	-2.068e-01	1.0000	1.0	0.13%	108.5	0.23%
Tgif2(Homeobox)/mES-Tgif2-ChIP-Seq(GSE55404)/Homer	TGTCANYT	1e0	-2.035e-01	1.0000	137.0	18.41%	9428.2	19.66%
PRDM1(Zf)/Hela-PRDM1-ChIP-Seq(GSE31477)/Homer	ACTTTCACTTTC	1e0	-1.973e-01	1.0000	17.0	2.28%	1330.5	2.77%
PAX5(Paired,Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GCAGCCAAGCRTGACH	1e0	-1.913e-01	1.0000	6.0	0.81%	527.2	1.10%
PU.1:IRF8(ETS:IRF)/pDC-Irf8-ChIP-Seq(GSE66899)/Homer	GGAAGTGAAAST	1e0	-1.820e-01	1.0000	5.0	0.67%	455.9	0.95%
HIF-1a(bHLH)/MCF7-HIF1a-ChIP-Seq(GSE28352)/Homer	TACGTGCV	1e0	-1.811e-01	1.0000	4.0	0.54%	376.3	0.78%
Cux2(Homeobox)/Liver-Cux2-ChIP-Seq(GSE35985)/Homer	HNRAATCAAT	1e0	-1.792e-01	1.0000	14.0	1.88%	1131.7	2.36%
Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer	AAGCACTTAA	1e0	-1.759e-01	1.0000	74.0	9.95%	5282.3	11.01%
PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer	GSCTGTCACTCA	1e0	-1.743e-01	1.0000	1.0	0.13%	118.8	0.25%
NPAS(bHLH)/Liver-NPAS-ChIP-Seq(GSE39860)/Homer	NVCACGTG	1e0	-1.715e-01	1.0000	50.0	6.72%	3659.5	7.63%
HNF1b(Homeobox)/PDAC-HNF1B-ChIP-Seq(GSE64557)/Homer	GTTAATNATTAA	1e0	-1.705e-01	1.0000	4.0	0.54%	382.5	0.80%
p63(p53)/Keratinocyte-p63-ChIP-Seq(GSE17611)/Homer	NNDRCATGYCYNRRCATGYH	1e0	-1.574e-01	1.0000	6.0	0.81%	550.8	1.15%
FOXA1:AR(Forkhead,NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	AGTAAACAAAAAAGAACAND	1e0	-1.522e-01	1.0000	1.0	0.13%	126.5	0.26%
Prop1(Homeobox)/GHFT1-PROP1.biotin-ChIP-Seq(GSE77302)/Homer	NTAATBNAATTA	1e0	-1.475e-01	1.0000	25.0	3.36%	1957.5	4.08%
HOXA9(Homeobox)/HSC-Hoxa9-ChIP-Seq(GSE33509)/Homer	GGCCATAAATCA	1e0	-1.431e-01	1.0000	22.0	2.96%	1749.0	3.65%
Usf2(bHLH)/C2C12-Usf2-ChIP-Seq(GSE36030)/Homer	GTCACGTGGT	1e0	-1.420e-01	1.0000	5.0	0.67%	482.8	1.01%
STAT4(Stat)/CD4-Stat4-ChIP-Seq(GSE22104)/Homer	NYTTCCWGGAAR	1e0	-1.390e-01	1.0000	32.0	4.30%	2465.9	5.14%
GATA3(Zf),DR8/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATSTNDNNDSAGATAASN	1e0	-1.377e-01	1.0000	1.0	0.13%	132.8	0.28%
KLF6(Zf)/PDAC-KLF6-ChIP-Seq(GSE64557)/Homer	MKGGGYGTGGCC	1e0	-1.337e-01	1.0000	15.0	2.02%	1253.2	2.61%
IRF3(IRF)/BMDM-Irf3-ChIP-Seq(GSE67343)/Homer	AGTTTCAKTTTC	1e0	-1.232e-01	1.0000	9.0	1.21%	814.2	1.70%
NRF(NRF)/Promoter/Homer	STGCGCATGCGC	1e0	-1.167e-01	1.0000	1.0	0.13%	142.1	0.30%
Max(bHLH)/K562-Max-ChIP-Seq(GSE31477)/Homer	RCCACGTGGYYN	1e0	-1.152e-01	1.0000	13.0	1.75%	1128.1	2.35%
EKLF(Zf)/Erythrocyte-Klf1-ChIP-Seq(GSE20478)/Homer	NWGGGTGTGGCY	1e0	-1.143e-01	1.0000	2.0	0.27%	244.4	0.51%
SF1(NR)/H295R-Nr5a1-ChIP-Seq(GSE44220)/Homer	CAAGGHCANV	1e0	-1.134e-01	1.0000	8.0	1.08%	747.8	1.56%
Hnf1(Homeobox)/Liver-Foxa2-Chip-Seq(GSE25694)/Homer	GGTTAAWCATTAA	1e0	-1.069e-01	1.0000	3.0	0.40%	341.3	0.71%
PAX5(Paired,Homeobox),condensed/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GTCACGCTCSCTGM	1e0	-1.006e-01	1.0000	1.0	0.13%	151.1	0.32%
Stat3+il21(Stat)/CD4-Stat3-ChIP-Seq(GSE19198)/Homer	SVYTTCCNGGAARB	1e0	-9.930e-02	1.0000	18.0	2.42%	1525.2	3.18%
ERE(NR),IR3/MCF7-ERa-ChIP-Seq(Unpublished)/Homer	VAGGTCACNSTGACC	1e0	-9.872e-02	1.0000	3.0	0.40%	348.3	0.73%
BMAL1(bHLH)/Liver-Bmal1-ChIP-Seq(GSE39860)/Homer	GNCACGTG	1e0	-9.732e-02	1.0000	55.0	7.39%	4161.0	8.68%
VDR(NR),DR3/GM10855-VDR+vitD-ChIP-Seq(GSE22484)/Homer	ARAGGTCANWGAGTTCANNN	1e0	-9.517e-02	1.0000	2.0	0.27%	258.6	0.54%
COUP-TFII(NR)/Artia-Nr2f2-ChIP-Seq(GSE46497)/Homer	AGRGGTCA	1e0	-9.482e-02	1.0000	40.0	5.38%	3118.3	6.50%
AMYB(HTH)/Testes-AMYB-ChIP-Seq(GSE44588)/Homer	TGGCAGTTGG	1e0	-9.115e-02	1.0000	47.0	6.32%	3621.0	7.55%
p53(p53)/Saos-p53-ChIP-Seq(GSE15780)/Homer	RRCATGYCYRGRCATGYYYN	1e0	-8.409e-02	1.0000	1.0	0.13%	162.1	0.34%
p53(p53)/Saos-p53-ChIP-Seq/Homer	RRCATGYCYRGRCATGYYYN	1e0	-8.409e-02	1.0000	1.0	0.13%	162.1	0.34%
ZNF189(Zf)/HEK293-ZNF189.GFP-ChIP-Seq(GSE58341)/Homer	TGGAACAGMA	1e0	-7.992e-02	1.0000	21.0	2.82%	1785.1	3.72%
E2F1(E2F)/Hela-E2F1-ChIP-Seq(GSE22478)/Homer	CWGGCGGGAA	1e0	-7.387e-02	1.0000	1.0	0.13%	170.3	0.36%
HOXD13(Homeobox)/Chicken-Hoxd13-ChIP-Seq(GSE38910)/Homer	NCYAATAAAA	1e0	-7.151e-02	1.0000	37.0	4.97%	2969.8	6.19%
PAX6(Paired,Homeobox)/Forebrain-Pax6-ChIP-Seq(GSE66961)/Homer	NGTGTTCAVTSAAGCGKAAA	1e0	-6.814e-02	1.0000	1.0	0.13%	175.5	0.37%
Mef2c(MADS)/GM12878-Mef2c-ChIP-Seq(GSE32465)/Homer	DCYAAAAATAGM	1e0	-6.381e-02	1.0000	11.0	1.48%	1059.4	2.21%
THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer	TRAGGTCA	1e0	-6.299e-02	1.0000	127.0	17.07%	9215.3	19.22%
MYB(HTH)/ERMYB-Myb-ChIPSeq(GSE22095)/Homer	GGCVGTTR	1e0	-5.849e-02	1.0000	55.0	7.39%	4293.5	8.95%
Srebp2(bHLH)/HepG2-Srebp2-ChIP-Seq(GSE31477)/Homer	CGGTCACSCCAC	1e0	-5.530e-02	1.0000	1.0	0.13%	188.8	0.39%
Mef2a(MADS)/HL1-Mef2a.biotin-ChIP-Seq(GSE21529)/Homer	CYAAAAATAG	1e0	-4.514e-02	1.0000	11.0	1.48%	1105.4	2.31%
E2F3(E2F)/MEF-E2F3-ChIP-Seq(GSE71376)/Homer	BTKGGCGGGAAA	1e0	-4.417e-02	1.0000	6.0	0.81%	692.0	1.44%
NFAT(RHD)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer	ATTTTCCATT	1e0	-3.751e-02	1.0000	31.0	4.17%	2664.8	5.56%
AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer	CCAGGAACAG	1e0	-3.606e-02	1.0000	127.0	17.07%	9399.3	19.60%
KLF10(Zf)/HEK293-KLF10.GFP-ChIP-Seq(GSE58341)/Homer	GGGGGTGTGTCC	1e0	-3.524e-02	1.0000	7.0	0.94%	802.2	1.67%
Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer	BTCAAGGTCA	1e0	-3.425e-02	1.0000	12.0	1.61%	1222.8	2.55%
Esrrb(NR)/mES-Esrrb-ChIP-Seq(GSE11431)/Homer	KTGACCTTGA	1e0	-2.622e-02	1.0000	10.0	1.34%	1091.8	2.28%
KLF5(Zf)/LoVo-KLF5-ChIP-Seq(GSE49402)/Homer	DGGGYGKGGC	1e0	-2.447e-02	1.0000	16.0	2.15%	1589.8	3.32%
ZBTB12(Zf)/HEK293-ZBTB12.GFP-ChIP-Seq(GSE58341)/Homer	NGNTCTAGAACCNGV	1e0	-2.338e-02	1.0000	5.0	0.67%	665.5	1.39%
NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer	YTGCCAAG	1e0	-2.163e-02	1.0000	49.0	6.59%	4092.5	8.53%
Pax7(Paired,Homeobox)/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCAATTA	1e0	-1.795e-02	1.0000	1.0	0.13%	259.1	0.54%
c-Myc(bHLH)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	VVCCACGTGG	1e0	-1.581e-02	1.0000	6.0	0.81%	796.0	1.66%
Klf4(Zf)/mES-Klf4-ChIP-Seq(GSE11431)/Homer	GCCACACCCA	1e0	-1.457e-02	1.0000	2.0	0.27%	399.6	0.83%
E2F4(E2F)/K562-E2F4-ChIP-Seq(GSE31477)/Homer	GGCGGGAAAH	1e0	-6.966e-03	1.0000	2.0	0.27%	453.2	0.95%
PRDM9(Zf)/Testis-DMC1-ChIP-Seq(GSE35498)/Homer	ADGGYAGYAGCATCT	1e0	-4.672e-03	1.0000	6.0	0.81%	913.8	1.91%
SpiB(ETS)/OCILY3-SPIB-ChIP-Seq(GSE56857)/Homer	AAAGRGGAAGTG	1e0	-2.909e-03	1.0000	2.0	0.27%	516.0	1.08%
Rfx6(HTH)/Min6b1-Rfx6.HA-ChIP-Seq(GSE62844)/Homer	TGTTKCCTAGCAACM	1e0	-2.052e-03	1.0000	17.0	2.28%	1994.1	4.16%
CTCF-SatelliteElement(Zf?)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer	TGCAGTTCCMVNWRTGGCCA	1e0	0.000e+00	1.0000	0.0	0.00%	18.1	0.04%
RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer	RGGTCADNNAGAGGTCAV	1e0	0.000e+00	1.0000	0.0	0.00%	45.7	0.10%
E2F7(E2F)/Hela-E2F7-ChIP-Seq(GSE32673)/Homer	VDTTTCCCGCCA	1e0	0.000e+00	1.0000	0.0	0.00%	85.8	0.18%
E2F(E2F)/Hela-CellCycle-Expression/Homer	TTSGCGCGAAAA	1e0	0.000e+00	1.0000	0.0	0.00%	48.0	0.10%
EBNA1(EBV-virus)/Raji-EBNA1-ChIP-Seq(GSE30709)/Homer	GGYAGCAYDTGCTDCCCNNN	1e0	0.000e+00	1.0000	0.0	0.00%	17.1	0.04%
GFX(?)/Promoter/Homer	ATTCTCGCGAGA	1e0	0.000e+00	1.0000	0.0	0.00%	13.6	0.03%
p53(p53)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	ACATGCCCGGGCAT	1e0	0.000e+00	1.0000	0.0	0.00%	12.3	0.03%
p73(p53)/Trachea-p73-ChIP-Seq(PRJNA310161)/Homer	NRRRCAWGTCCDGRCATGYY	1e0	0.000e+00	1.0000	0.0	0.00%	76.6	0.16%
REST-NRSF(Zf)/Jurkat-NRSF-ChIP-Seq/Homer	GGMGCTGTCCATGGTGCTGA	1e0	0.000e+00	1.0000	0.0	0.00%	6.7	0.01%
Ronin(THAP)/ES-Thap11-ChIP-Seq(GSE51522)/Homer	RACTACAACTCCCAGVAKGC	1e0	0.000e+00	1.0000	0.0	0.00%	39.6	0.08%
T1ISRE(IRF)/ThioMac-Ifnb-Expression/Homer	ACTTTCGTTTCT	1e0	0.000e+00	1.0000	0.0	0.00%	27.2	0.06%
ZBTB33(Zf)/GM12878-ZBTB33-ChIP-Seq(GSE32465)/Homer	GGVTCTCGCGAGAAC	1e0	0.000e+00	1.0000	0.0	0.00%	27.8	0.06%
ZFP3(Zf)/HEK293-ZFP3.GFP-ChIP-Seq(GSE58341)/Homer	GGGTTTTGAAGGATGARTAGGAGTT	1e0	0.000e+00	1.0000	0.0	0.00%	5.8	0.01%
ZNF41(Zf)/HEK293-ZNF41.GFP-ChIP-Seq(GSE58341)/Homer	CCTCATGGTGYCYTWYTCCCTTGTG	1e0	0.000e+00	1.0000	0.0	0.00%	39.9	0.08%
ZNF528(Zf)/HEK293-ZNF528.GFP-ChIP-Seq(GSE58341)/Homer	AGAAATGACTTCCCT	1e0	0.000e+00	1.0000	0.0	0.00%	8.7	0.02%