Information for 5-GGGGATTAGC (Motif 5)

C T A G C T A G T A C G C A T G G C T A C A G T G A C T C G T A A C T G A G T C
Reverse Opposite:
T C A G T G A C G C A T C T G A G T C A C G A T G T A C A T G C G A T C G A T C
p-value:1e-21
log p-value:-5.004e+01
Information Content per bp:1.655
Number of Target Sequences with motif61.0
Percentage of Target Sequences with motif8.20%
Number of Background Sequences with motif848.8
Percentage of Background Sequences with motif1.77%
Average Position of motif in Targets54.2 +/- 26.2bp
Average Position of motif in Background50.7 +/- 28.4bp
Strand Bias (log2 ratio + to - strand density)-0.2
Multiplicity (# of sites on avg that occur together)1.02
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0139.1_Pitx3/Jaspar

Match Rank:1
Score:0.93
Offset:-2
Orientation:forward strand
Alignment:--GGGGATTAGC----
AGGGGGATTAGCTGCC
 A C G T A C G T C T A G C T A G T A C G C A T G G C T A C A G T G A C T C G T A A C T G A G T C A C G T A C G T A C G T A C G T
T C G A C T A G T A C G C T A G C T A G A C T G G T C A A G C T G A C T C G T A C A T G A T G C A C G T C T A G A T G C A T G C

PH0015.1_Crx/Jaspar

Match Rank:2
Score:0.91
Offset:-4
Orientation:forward strand
Alignment:----GGGGATTAGC--
CGTTGGGGATTAGCCT
 A C G T A C G T A C G T A C G T C T A G C T A G T A C G C A T G G C T A C A G T G A C T C G T A A C T G A G T C A C G T A C G T
A G T C A C T G C G A T C G A T T A C G T A C G C T A G A C T G G T C A A C G T C G A T C G T A C T A G A G T C A T G C C A G T

GSC/MA0648.1/Jaspar

Match Rank:3
Score:0.88
Offset:0
Orientation:reverse strand
Alignment:GGGGATTAGC
NNGGATTAGN
 C T A G C T A G T A C G C A T G G C T A C A G T G A C T C G T A A C T G A G T C
C T A G T A C G T C A G T C A G T G C A A C G T G A C T C T G A C T A G A T G C

CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer

Match Rank:4
Score:0.86
Offset:2
Orientation:reverse strand
Alignment:GGGGATTAGC
--GGATTAGC
 C T A G C T A G T A C G C A T G G C T A C A G T G A C T C G T A A C T G A G T C
A C G T A C G T T C A G T A C G T G C A C A G T G C A T C G T A C T A G T A G C

PH0123.1_Obox3/Jaspar

Match Rank:5
Score:0.85
Offset:-4
Orientation:forward strand
Alignment:----GGGGATTAGC---
TGAGGGGGATTAACTAT
 A C G T A C G T A C G T A C G T C T A G C T A G T A C G C A T G G C T A C A G T G A C T C G T A A C T G A G T C A C G T A C G T A C G T
G C A T A T C G T C G A T A C G C T A G C T A G C T A G C A T G G C T A A C G T G A C T C G T A C G T A G T A C C G A T G T C A G A C T

Otx2(Homeobox)/EpiLC-Otx2-ChIP-Seq(GSE56098)/Homer

Match Rank:6
Score:0.85
Offset:0
Orientation:reverse strand
Alignment:GGGGATTAGC
VRGGATTARN
 C T A G C T A G T A C G C A T G G C T A C A G T G A C T C G T A A C T G A G T C
T C G A C T A G C T A G C T A G G T C A A C G T C G A T C G T A C T G A T A G C

Crx/MA0467.1/Jaspar

Match Rank:7
Score:0.85
Offset:-2
Orientation:forward strand
Alignment:--GGGGATTAGC
AAGAGGATTAG-
 A C G T A C G T C T A G C T A G T A C G C A T G G C T A C A G T G A C T C G T A A C T G A G T C
T C G A C T G A C T A G T C G A C T A G A C T G G T C A A C G T A G C T C G T A C T A G A C G T

GSC2/MA0891.1/Jaspar

Match Rank:8
Score:0.85
Offset:0
Orientation:reverse strand
Alignment:GGGGATTAGC
GNGGATTAGN
 C T A G C T A G T A C G C A T G G C T A C A G T G A C T C G T A A C T G A G T C
C T A G T A G C T C A G C A T G T G C A C G A T C G A T C G T A C T A G A C T G

PITX3/MA0714.1/Jaspar

Match Rank:9
Score:0.85
Offset:1
Orientation:reverse strand
Alignment:GGGGATTAGC
-GGGATTANN
 C T A G C T A G T A C G C A T G G C T A C A G T G A C T C G T A A C T G A G T C
A C G T C T A G T C A G C A T G G T C A A G C T G A C T C G T A C T G A A T C G

PH0035.1_Gsc/Jaspar

Match Rank:10
Score:0.84
Offset:-3
Orientation:reverse strand
Alignment:---GGGGATTAGC----
NNAAGGGATTAACGANT
 A C G T A C G T A C G T C T A G C T A G T A C G C A T G G C T A C A G T G A C T C G T A A C T G A G T C A C G T A C G T A C G T A C G T
A C G T C G T A G T C A C T G A T A C G C T A G C T A G G T C A A C G T A G C T C G T A C T G A A G T C C A T G C G T A A G C T C G A T