Information for 12-AGTGAGAGRCTGGACA (Motif 14)

C G T A A C T G C A G T C T A G C G T A A T C G C G T A C T A G C T A G A G T C A C G T A C T G A C T G C G T A G T A C C T G A
Reverse Opposite:
A G C T A C T G A C G T T A G C G T A C C G T A A C T G A G T C A G T C A C G T A T G C A C G T A G T C G C T A G T A C C G A T
p-value:1e-12
log p-value:-2.807e+01
Information Content per bp:1.798
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif0.94%
Number of Background Sequences with motif4.1
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets41.6 +/- 23.5bp
Average Position of motif in Background25.0 +/- 12.5bp
Strand Bias (log2 ratio + to - strand density)0.4
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

SMAD2::SMAD3::SMAD4/MA0513.1/Jaspar

Match Rank:1
Score:0.52
Offset:-1
Orientation:reverse strand
Alignment:-AGTGAGAGRCTGGACA
AGGTGNCAGACAG----
 A C G T C G T A A C T G C A G T C T A G C G T A A T C G C G T A C T A G C T A G A G T C A C G T A C T G A C T G C G T A G T A C C T G A
C T G A C T A G A T C G C G A T A T C G G T C A A T G C C G T A A C T G T G C A A G T C C G T A A T C G A C G T A C G T A C G T A C G T

Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer

Match Rank:2
Score:0.52
Offset:-1
Orientation:forward strand
Alignment:-AGTGAGAGRCTGGACA
AGGTGHCAGACA-----
 A C G T C G T A A C T G C A G T C T A G C G T A A T C G C G T A C T A G C T A G A G T C A C G T A C T G A C T G C G T A G T A C C T G A
C T G A C T A G A T C G G C A T A C T G G T A C A T G C C G T A A C T G G C T A A G T C C G T A A C G T A C G T A C G T A C G T A C G T

ZNF416(Zf)/HEK293-ZNF416.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:3
Score:0.52
Offset:6
Orientation:forward strand
Alignment:AGTGAGAGRCTGGACA
------WDNCTGGGCA
 C G T A A C T G C A G T C T A G C G T A A T C G C G T A C T A G C T A G A G T C A C G T A C T G A C T G C G T A G T A C C T G A
A C G T A C G T A C G T A C G T A C G T A C G T G C A T C T A G G T A C A G T C C G A T A C T G C T A G C T A G G T A C G C T A

ZNF317(Zf)/HEK293-ZNF317.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:4
Score:0.50
Offset:2
Orientation:reverse strand
Alignment:AGTGAGAGRCTGGACA-
--AGAGRRACAGCWGAC
 C G T A A C T G C A G T C T A G C G T A A T C G C G T A C T A G C T A G A G T C A C G T A C T G A C T G C G T A G T A C C T G A A C G T
A C G T A C G T T C G A C T A G C G T A C T A G C T G A T C A G C G T A A G T C C G T A T C A G T G A C G C A T A C T G C G T A A G T C

Nkx2-5(var.2)/MA0503.1/Jaspar

Match Rank:5
Score:0.49
Offset:0
Orientation:reverse strand
Alignment:AGTGAGAGRCTGGACA
CTTGAGTGGCT-----
 C G T A A C T G C A G T C T A G C G T A A T C G C G T A C T A G C T A G A G T C A C G T A C T G A C T G C G T A G T A C C T G A
A T G C G A C T C A G T C T A G C G T A A C T G C G A T A C T G A T C G G A T C G A C T A C G T A C G T A C G T A C G T A C G T

Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:6
Score:0.49
Offset:1
Orientation:reverse strand
Alignment:AGTGAGAGRCTGGACA
-TTGAGTGSTT-----
 C G T A A C T G C A G T C T A G C G T A A T C G C G T A C T A G C T A G A G T C A C G T A C T G A C T G C G T A G T A C C T G A
A C G T G C A T A C G T C T A G C G T A C A T G C G A T C T A G A T C G G A C T G A C T A C G T A C G T A C G T A C G T A C G T

PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer

Match Rank:7
Score:0.48
Offset:-2
Orientation:reverse strand
Alignment:--AGTGAGAGRCTGGACA
TGAGTGACAGSC------
 A C G T A C G T C G T A A C T G C A G T C T A G C G T A A T C G C G T A C T A G C T A G A G T C A C G T A C T G A C T G C G T A G T A C C T G A
C G A T A T C G T C G A A C T G C G A T A T C G C T G A A G T C C G T A A T C G T A C G G A T C A C G T A C G T A C G T A C G T A C G T A C G T

SMAD3/MA0795.1/Jaspar

Match Rank:8
Score:0.47
Offset:6
Orientation:forward strand
Alignment:AGTGAGAGRCTGGACA
------CGTCTAGACA
 C G T A A C T G C A G T C T A G C G T A A T C G C G T A C T A G C T A G A G T C A C G T A C T G A C T G C G T A G T A C C T G A
A C G T A C G T A C G T A C G T A C G T A C G T G A T C C T A G C G A T T A G C A G C T T G C A A T C G G T C A G A T C G C T A

PRDM1(Zf)/Hela-PRDM1-ChIP-Seq(GSE31477)/Homer

Match Rank:9
Score:0.47
Offset:-3
Orientation:reverse strand
Alignment:---AGTGAGAGRCTGGACA
GAAAGTGAAAGT-------
 A C G T A C G T A C G T C G T A A C T G C A G T C T A G C G T A A T C G C G T A C T A G C T A G A G T C A C G T A C T G A C T G C G T A G T A C C T G A
T C A G C G T A T G C A C T G A C T A G C G A T C T A G G C T A T C G A C G T A A C T G A G C T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer

Match Rank:10
Score:0.47
Offset:1
Orientation:reverse strand
Alignment:AGTGAGAGRCTGGACA
-NTGATTGACAGN---
 C G T A A C T G C A G T C T A G C G T A A T C G C G T A C T A G C T A G A G T C A C G T A C T G A C T G C G T A G T A C C T G A
A C G T A C G T C G A T A T C G C G T A A C G T C A G T A C T G C T G A A G T C C T G A A T C G A T C G A C G T A C G T A C G T