Information for 5-AAGGGGTTAACKC (Motif 6)

G T C A C G T A C T A G A C T G C T A G A T C G A C G T C A G T G C T A C G T A T A G C A C G T T A G C
Reverse Opposite:
A T C G T G C A A T C G C G A T C A G T G C T A C G T A A T G C G A T C A G T C G A T C G C A T C A G T
p-value:1e-17
log p-value:-4.058e+01
Information Content per bp:1.706
Number of Target Sequences with motif11.0
Percentage of Target Sequences with motif1.48%
Number of Background Sequences with motif8.8
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets45.7 +/- 19.5bp
Average Position of motif in Background30.5 +/- 14.0bp
Strand Bias (log2 ratio + to - strand density)0.5
Multiplicity (# of sites on avg that occur together)1.09
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0030.1_Hnf4a_1/Jaspar

Match Rank:1
Score:0.71
Offset:-3
Orientation:forward strand
Alignment:---AAGGGGTTAACKC-
CTCCAGGGGTCAATTGA
 A C G T A C G T A C G T G T C A C G T A C T A G A C T G C T A G A T C G A C G T C A G T G C T A C G T A T A G C A C G T T A G C A C G T
A T G C C A G T A G C T T G A C G T C A T C A G C T A G A C T G A C T G A C G T A G T C T G C A G T C A A G C T G C A T C A T G T G C A

PH0124.1_Obox5_1/Jaspar

Match Rank:2
Score:0.71
Offset:-2
Orientation:forward strand
Alignment:--AAGGGGTTAACKC--
TAGAGGGATTAAATTTC
 A C G T A C G T G T C A C G T A C T A G A C T G C T A G A T C G A C G T C A G T G C T A C G T A T A G C A C G T T A G C A C G T A C G T
G C A T C T G A T C A G T C G A T C A G C T A G C A T G C G T A A C G T C G A T C G T A C G T A G C T A G A C T A G C T G C A T G T A C

Tbr1(T-box)/Cortex-Tbr1-ChIP-Seq(GSE71384)/Homer

Match Rank:3
Score:0.70
Offset:0
Orientation:forward strand
Alignment:AAGGGGTTAACKC
AAGGTGTKAA---
 G T C A C G T A C T A G A C T G C T A G A T C G A C G T C A G T G C T A C G T A T A G C A C G T T A G C
C T G A C T G A C A T G A T C G A G C T A T C G G A C T C A T G C T G A G T C A A C G T A C G T A C G T

Eomes(T-box)/H9-Eomes-ChIP-Seq(GSE26097)/Homer

Match Rank:4
Score:0.70
Offset:1
Orientation:reverse strand
Alignment:AAGGGGTTAACKC
-AGGTGTTAAT--
 G T C A C G T A C T A G A C T G C T A G A T C G A C G T C A G T G C T A C G T A T A G C A C G T T A G C
A C G T C T G A C T A G A T C G C G A T C T A G G C A T A C G T C T G A C T G A C G A T A C G T A C G T

PH0125.1_Obox5_2/Jaspar

Match Rank:5
Score:0.70
Offset:-2
Orientation:reverse strand
Alignment:--AAGGGGTTAACKC--
NANAGGGATTAATTATN
 A C G T A C G T G T C A C G T A C T A G A C T G C T A G A T C G A C G T C A G T G C T A C G T A T A G C A C G T T A G C A C G T A C G T
T C G A C T G A T C A G T C G A T C A G T C A G A C T G G C T A A C G T C G A T C G T A C G T A G C A T G A C T T C G A G C A T T G A C

PH0137.1_Pitx1/Jaspar

Match Rank:6
Score:0.69
Offset:-3
Orientation:forward strand
Alignment:---AAGGGGTTAACKC-
TTAGAGGGATTAACAAT
 A C G T A C G T A C G T G T C A C G T A C T A G A C T G C T A G A T C G A C G T C A G T G C T A C G T A T A G C A C G T T A G C A C G T
G A C T A C G T T C G A C T A G C T G A T C A G C T A G C A T G G T C A A C G T G A C T C G T A C T G A G T A C C T G A G T C A G C A T

TBX2/MA0688.1/Jaspar

Match Rank:7
Score:0.69
Offset:0
Orientation:forward strand
Alignment:AAGGGGTTAACKC
AAGGTGTGAAA--
 G T C A C G T A C T A G A C T G C T A G A T C G A C G T C A G T G C T A C G T A T A G C A C G T T A G C
C G T A C T G A T C A G A T C G A G C T C T A G G A C T A C T G C T G A C G T A C G T A A C G T A C G T

PB0118.1_Esrra_2/Jaspar

Match Rank:8
Score:0.69
Offset:-3
Orientation:forward strand
Alignment:---AAGGGGTTAACKC-
GGCGAGGGGTCAAGGGC
 A C G T A C G T A C G T G T C A C G T A C T A G A C T G C T A G A T C G A C G T C A G T G C T A C G T A T A G C A C G T T A G C A C G T
T A C G C A T G A T G C A C T G G C T A T A C G T C A G C A T G A C T G C G A T A G T C C T G A G C T A C T A G A T C G A T C G G T A C

PH0121.1_Obox1/Jaspar

Match Rank:9
Score:0.68
Offset:-3
Orientation:forward strand
Alignment:---AAGGGGTTAACKC-
TTAAGGGGATTAACTAC
 A C G T A C G T A C G T G T C A C G T A C T A G A C T G C T A G A T C G A C G T C A G T G C T A C G T A T A G C A C G T T A G C A C G T
C A G T C G A T T C G A T C G A C T A G C T A G C T A G A C T G G T C A A G C T G A C T C G T A C G T A G T A C C G A T G C T A A G T C

TBX21/MA0690.1/Jaspar

Match Rank:10
Score:0.68
Offset:0
Orientation:forward strand
Alignment:AAGGGGTTAACKC
AAGGTGTGAA---
 G T C A C G T A C T A G A C T G C T A G A T C G A C G T C A G T G C T A C G T A T A G C A C G T T A G C
C T G A C T G A C T A G A C T G A G C T C A T G G A C T A C T G C T G A G C T A A C G T A C G T A C G T