Information for 5-KTCAWTTGGGAATCCC (Motif 5)

A C T G G A C T A T G C C G T A G C A T A C G T C G A T C T A G A C T G T C A G G T C A C G T A C G A T A T G C A G T C G A T C
Reverse Opposite:
C T A G C T A G A T C G C G T A A C G T A C G T A G T C A G T C G A T C C G T A C G T A C G T A A C G T A T C G C G T A T G A C
p-value:1e-21
log p-value:-5.031e+01
Information Content per bp:1.713
Number of Target Sequences with motif9.0
Percentage of Target Sequences with motif1.21%
Number of Background Sequences with motif1.8
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets51.2 +/- 28.7bp
Average Position of motif in Background50.9 +/- 15.8bp
Strand Bias (log2 ratio + to - strand density)0.7
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0133.1_Hic1_2/Jaspar

Match Rank:1
Score:0.67
Offset:1
Orientation:reverse strand
Alignment:KTCAWTTGGGAATCCC-
-NNNNTTGGGCACNNCN
 A C T G G A C T A T G C C G T A G C A T A C G T C G A T C T A G A C T G T C A G G T C A C G T A C G A T A T G C A G T C G A T C A C G T
A C G T A G T C G A T C C A G T G C A T G C A T C A G T A C T G A C T G A C T G A G T C C G T A G A T C G T C A G T A C T A G C G T A C

MF0003.1_REL_class/Jaspar

Match Rank:2
Score:0.61
Offset:7
Orientation:reverse strand
Alignment:KTCAWTTGGGAATCCC-
-------GGAAATCCCC
 A C T G G A C T A T G C C G T A G C A T A C G T C G A T C T A G A C T G T C A G G T C A C G T A C G A T A T G C A G T C G A T C A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T C A T G C T A G C T G A T C G A G C T A C G A T G A T C G T A C T G A C T A G C

RELA/MA0107.1/Jaspar

Match Rank:3
Score:0.60
Offset:7
Orientation:reverse strand
Alignment:KTCAWTTGGGAATCCC-
-------GGAAATTCCC
 A C T G G A C T A T G C C G T A G C A T A C G T C G A T C T A G A C T G T C A G G T C A C G T A C G A T A T G C A G T C G A T C A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C T G A C T G C T G A C G T A C G T A A G C T A G C T A G T C G T A C T A G C

NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer

Match Rank:4
Score:0.59
Offset:7
Orientation:reverse strand
Alignment:KTCAWTTGGGAATCCC---
-------GGGAAATCCCCN
 A C T G G A C T A T G C C G T A G C A T A C G T C G A T C T A G A C T G T C A G G T C A C G T A C G A T A T G C A G T C G A T C A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T C A T G C T A G C T A G C T G A G C T A C G T A A G C T G A T C G T A C G T A C G T A C G C A T

REL/MA0101.1/Jaspar

Match Rank:5
Score:0.58
Offset:8
Orientation:reverse strand
Alignment:KTCAWTTGGGAATCCC--
--------GGAAANCCCC
 A C T G G A C T A T G C C G T A G C A T A C G T C G A T C T A G A C T G T C A G G T C A C G T A C G A T A T G C A G T C G A T C A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C T G C T A G C G T A C G T A C G T A A C G T G A T C G A T C T A G C T A G C

NFkB-p50,p52(RHD)/Monocyte-p50-ChIP-Chip(Schreiber_et_al.)/Homer

Match Rank:6
Score:0.57
Offset:5
Orientation:forward strand
Alignment:KTCAWTTGGGAATCCC-
-----GGGGGAATCCCC
 A C T G G A C T A T G C C G T A G C A T A C G T C G A T C T A G A C T G T C A G G T C A C G T A C G A T A T G C A G T C G A T C A C G T
A C G T A C G T A C G T A C G T A C G T T C A G C T A G C T A G C T A G T C A G T C G A C T G A C G A T A G T C G A T C A G T C T G A C

NFkB-p65-Rel(RHD)/ThioMac-LPS-Expression(GSE23622)/Homer

Match Rank:7
Score:0.56
Offset:7
Orientation:forward strand
Alignment:KTCAWTTGGGAATCCC-
-------GGAAATTCCC
 A C T G G A C T A T G C C G T A G C A T A C G T C G A T C T A G A C T G T C A G G T C A C G T A C G A T A T G C A G T C G A T C A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C T G C A T G G C T A T C G A G C T A A G C T A G C T G T A C A G T C T G A C

PH0127.1_Nobox/Jaspar

Match Rank:8
Score:0.56
Offset:-3
Orientation:forward strand
Alignment:---KTCAWTTGGGAATCCC
CGCGCTAATTAGGTATC--
 A C G T A C G T A C G T A C T G G A C T A T G C C G T A G C A T A C G T C G A T C T A G A C T G T C A G G T C A C G T A C G A T A T G C A G T C G A T C
T A G C A T C G A T G C T C A G A G T C G A C T C T G A C G T A G C A T A G C T C T G A T C A G A C T G G C A T C G T A G A C T A T G C A C G T A C G T

Rbpj1(?)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer

Match Rank:9
Score:0.56
Offset:4
Orientation:reverse strand
Alignment:KTCAWTTGGGAATCCC
----CSTGGGAAAD--
 A C T G G A C T A T G C C G T A G C A T A C G T C G A T C T A G A C T G T C A G G T C A C G T A C G A T A T G C A G T C G A T C
A C G T A C G T A C G T A C G T A G T C T A C G C G A T A C T G C T A G A C T G C G T A C T G A G T C A C T G A A C G T A C G T

TEAD4(TEA)/Tropoblast-Tead4-ChIP-Seq(GSE37350)/Homer

Match Rank:10
Score:0.55
Offset:5
Orientation:forward strand
Alignment:KTCAWTTGGGAATCCC
-----CCWGGAATGY-
 A C T G G A C T A T G C C G T A G C A T A C G T C G A T C T A G A C T G T C A G G T C A C G T A C G A T A T G C A G T C G A T C
A C G T A C G T A C G T A C G T A C G T T A G C T A G C G C A T C A T G A C T G G C T A C G T A A C G T A C T G G A T C A C G T