Information for 3-CAGCAGGRRK (Motif 4)

A G T C G T C A A T C G A G T C C T G A A C T G A C T G C T A G T C A G C A G T
Reverse Opposite:
G T C A A G T C G A T C G T A C G T A C G A C T T C A G A T G C C A G T A C T G
p-value:1e-40
log p-value:-9.376e+01
Information Content per bp:1.639
Number of Target Sequences with motif190.0
Percentage of Target Sequences with motif25.64%
Number of Background Sequences with motif4181.3
Percentage of Background Sequences with motif8.80%
Average Position of motif in Targets50.6 +/- 22.3bp
Average Position of motif in Background50.4 +/- 31.0bp
Strand Bias (log2 ratio + to - strand density)-0.1
Multiplicity (# of sites on avg that occur together)1.13
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer

Match Rank:1
Score:0.85
Offset:-3
Orientation:reverse strand
Alignment:---CAGCAGGRRK--
DCHCAGCAGGRGGCC
 A C G T A C G T A C G T A G T C G T C A A T C G A G T C C T G A A C T G A C T G C T A G T C A G C A G T A C G T A C G T
C A T G T G A C G T C A A T G C G C T A T A C G A G T C C T G A C A T G A T C G C T A G C T A G A T C G A T G C G T A C

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:2
Score:0.83
Offset:-2
Orientation:forward strand
Alignment:--CAGCAGGRRK
CACAGCAGGGGG
 A C G T A C G T A G T C G T C A A T C G A G T C C T G A A C T G A C T G C T A G T C A G C A G T
T G A C G C T A T G A C C G T A T C A G G A T C C G T A C A T G C A T G C T A G C T A G C T A G

Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer

Match Rank:3
Score:0.80
Offset:-3
Orientation:reverse strand
Alignment:---CAGCAGGRRK
DCTCAGCAGG---
 A C G T A C G T A C G T A G T C G T C A A T C G A G T C C T G A A C T G A C T G C T A G T C A G C A G T
C A G T G T A C G C A T A G T C G C T A A C T G A G T C C T G A A C T G A C T G A C G T A C G T A C G T

PB0206.1_Zic2_2/Jaspar

Match Rank:4
Score:0.79
Offset:-5
Orientation:forward strand
Alignment:-----CAGCAGGRRK
CCACACAGCAGGAGA
 A C G T A C G T A C G T A C G T A C G T A G T C G T C A A T C G A G T C C T G A A C T G A C T G C T A G T C A G C A G T
G A T C G A T C C G T A T G A C T C G A A G T C G C T A C T A G A G T C C T G A A C T G A C T G G T C A T C A G C G T A

PB0205.1_Zic1_2/Jaspar

Match Rank:5
Score:0.78
Offset:-5
Orientation:forward strand
Alignment:-----CAGCAGGRRK
CCACACAGCAGGAGA
 A C G T A C G T A C G T A C G T A C G T A G T C G T C A A T C G A G T C C T G A A C T G A C T G C T A G T C A G C A G T
A G T C G T A C C G T A T G A C T C G A A G T C G C T A C T A G A G T C C T G A A C T G A C T G G T C A T C A G C G T A

ZIC4/MA0751.1/Jaspar

Match Rank:6
Score:0.76
Offset:-3
Orientation:reverse strand
Alignment:---CAGCAGGRRK--
NCNCAGCGGGGGGTC
 A C G T A C G T A C G T A G T C G T C A A T C G A G T C C T G A A C T G A C T G C T A G T C A G C A G T A C G T A C G T
C A T G T G A C C T G A G A T C G T C A T C A G G A T C C T A G C A T G C A T G C A T G C A T G C A T G A G C T T G A C

PB0207.1_Zic3_2/Jaspar

Match Rank:7
Score:0.75
Offset:-5
Orientation:forward strand
Alignment:-----CAGCAGGRRK
GAGCACAGCAGGACA
 A C G T A C G T A C G T A C G T A C G T A G T C G T C A A T C G A G T C C T G A A C T G A C T G C T A G T C A G C A G T
C A T G C G T A C T A G T G A C C T G A A G T C C G T A C T A G A G T C C T G A A C T G A C T G G T C A T A G C C G T A

ZIC3/MA0697.1/Jaspar

Match Rank:8
Score:0.74
Offset:-3
Orientation:reverse strand
Alignment:---CAGCAGGRRK--
NCGCAGCGGGGGGTC
 A C G T A C G T A C G T A G T C G T C A A T C G A G T C C T G A A C T G A C T G C T A G T C A G C A G T A C G T A C G T
C A T G G T A C C T A G G A T C T G C A T C A G A G T C C T A G A C T G A C T G C A T G C A T G C A T G A G C T T G A C

ZIC1/MA0696.1/Jaspar

Match Rank:9
Score:0.73
Offset:-2
Orientation:reverse strand
Alignment:--CAGCAGGRRK--
CACAGCGGGGGGTC
 A C G T A C G T A G T C G T C A A T C G A G T C C T G A A C T G A C T G C T A G T C A G C A G T A C G T A C G T
T G A C C T G A A G T C T G C A T C A G A G T C C T A G C A T G T C A G C A T G C A T G C A T G A G C T T G A C

BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer

Match Rank:10
Score:0.65
Offset:-2
Orientation:reverse strand
Alignment:--CAGCAGGRRK--------
GCCASCAGGGGGCGCYVNNG
 A C G T A C G T A G T C G T C A A T C G A G T C C T G A A C T G A C T G C T A G T C A G C A G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
C T A G T A G C A G T C C G T A T A G C G A T C C G T A A C T G C T A G C A T G A C T G A C T G G T A C C T A G A T G C G A T C T C A G A C T G T C A G A T C G