Information for 2-VACAAWRRVS (Motif 3)

T C A G C T G A G T A C G T C A G C T A G C T A C T G A C T G A T C G A T A C G
Reverse Opposite:
A T G C A G C T G A C T G A C T C G A T C G A T A C G T A C T G A G C T A G T C
p-value:1e-46
log p-value:-1.065e+02
Information Content per bp:1.599
Number of Target Sequences with motif190.0
Percentage of Target Sequences with motif25.64%
Number of Background Sequences with motif3816.4
Percentage of Background Sequences with motif8.03%
Average Position of motif in Targets50.7 +/- 26.6bp
Average Position of motif in Background50.7 +/- 31.0bp
Strand Bias (log2 ratio + to - strand density)-0.4
Multiplicity (# of sites on avg that occur together)1.15
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer

Match Rank:1
Score:0.91
Offset:0
Orientation:reverse strand
Alignment:VACAAWRRVS
RACAAWGG--
 T C A G C T G A G T A C G T C A G C T A G C T A C T G A C T G A T C G A T A C G
T C G A G T C A T G A C C G T A C G T A C G T A C T A G T A C G A C G T A C G T

Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer

Match Rank:2
Score:0.90
Offset:-2
Orientation:reverse strand
Alignment:--VACAAWRRVS
RNAACAATGG--
 A C G T A C G T T C A G C T G A G T A C G T C A G C T A G C T A C T G A C T G A T C G A T A C G
T C G A T C A G T C G A T C G A A T G C C G T A T C G A G C A T C A T G T A C G A C G T A C G T

Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer

Match Rank:3
Score:0.89
Offset:-2
Orientation:reverse strand
Alignment:--VACAAWRRVS
VRRACAAWGG--
 A C G T A C G T T C A G C T G A G T A C G T C A G C T A G C T A C T G A C T G A T C G A T A C G
T A G C C T A G T C G A C G T A A G T C C G T A C T G A C G T A C T A G T A C G A C G T A C G T

Sox15(HMG)/CPA-Sox15-ChIP-Seq(GSE62909)/Homer

Match Rank:4
Score:0.88
Offset:-1
Orientation:forward strand
Alignment:-VACAAWRRVS
RAACAATGGN-
 A C G T T C A G C T G A G T A C G T C A G C T A G C T A C T G A C T G A T C G A T A C G
C T G A T C G A C G T A A T G C C G T A C G T A C G A T C T A G T C A G G A T C A C G T

PB0071.1_Sox4_1/Jaspar

Match Rank:5
Score:0.87
Offset:-5
Orientation:forward strand
Alignment:-----VACAAWRRVS--
AGAAGAACAAAGGACTA
 A C G T A C G T A C G T A C G T A C G T T C A G C T G A G T A C G T C A G C T A G C T A C T G A C T G A T C G A T A C G A C G T A C G T
G T C A A C T G C T G A C G T A C T A G T C G A C G T A A G T C C G T A C G T A C G T A C T A G T C A G T C G A A G T C G C A T G C T A

Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer

Match Rank:6
Score:0.86
Offset:-1
Orientation:reverse strand
Alignment:-VACAAWRRVS
GAACAATGGN-
 A C G T T C A G C T G A G T A C G T C A G C T A G C T A C T G A C T G A T C G A T A C G
C T A G T C G A C G T A A G T C C G T A C G T A C G A T C T A G T C A G T A C G A C G T

Sox17/MA0078.1/Jaspar

Match Rank:7
Score:0.86
Offset:0
Orientation:reverse strand
Alignment:VACAAWRRVS
GACAATGNN-
 T C A G C T G A G T A C G T C A G C T A G C T A C T G A C T G A T C G A T A C G
T A C G G T C A A G T C C G T A C T G A C G A T C T A G C G T A C T A G A C G T

SOX10/MA0442.1/Jaspar

Match Rank:8
Score:0.85
Offset:1
Orientation:reverse strand
Alignment:VACAAWRRVS
-ACAAAG---
 T C A G C T G A G T A C G T C A G C T A G C T A C T G A C T G A T C G A T A C G
A C G T G T C A A T G C C G T A T G C A C G T A C T A G A C G T A C G T A C G T

PB0061.1_Sox11_1/Jaspar

Match Rank:9
Score:0.85
Offset:-5
Orientation:forward strand
Alignment:-----VACAAWRRVS--
ATAAGAACAAAGGACTA
 A C G T A C G T A C G T A C G T A C G T T C A G C T G A G T A C G T C A G C T A G C T A C T G A C T G A T C G A T A C G A C G T A C G T
G C T A A C G T C G T A C G T A C T A G T C G A C G T A A G T C C G T A G T C A C G T A C T A G T C A G T C G A A G T C G C A T G C T A

Sox3/MA0514.1/Jaspar

Match Rank:10
Score:0.85
Offset:-2
Orientation:reverse strand
Alignment:--VACAAWRRVS
AAAACAAAGG--
 A C G T A C G T T C A G C T G A G T A C G T C A G C T A G C T A C T G A C T G A T C G A T A C G
T C G A T C G A T C G A C G T A A T G C C G T A C G T A C G T A C T A G T A C G A C G T A C G T