Information for 1-ATTTACATAACAA (Motif 1)

G T C A G C A T G A C T C G A T T C G A G T A C C G T A G C A T C T G A G C T A A T G C C T G A C T G A
Reverse Opposite:
A G C T A G C T T A C G C G A T G A C T C G T A G C A T C A T G A G C T G C T A C T G A C G T A C A G T
p-value:1e-62
log p-value:-1.441e+02
Information Content per bp:1.650
Number of Target Sequences with motif104.0
Percentage of Target Sequences with motif14.04%
Number of Background Sequences with motif750.1
Percentage of Background Sequences with motif1.58%
Average Position of motif in Targets50.9 +/- 27.1bp
Average Position of motif in Background49.5 +/- 30.6bp
Strand Bias (log2 ratio + to - strand density)0.1
Multiplicity (# of sites on avg that occur together)1.03
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

OCT4-SOX2-TCF-NANOG(POU,Homeobox,HMG)/mES-Oct4-ChIP-Seq(GSE11431)/Homer

Match Rank:1
Score:0.92
Offset:0
Orientation:forward strand
Alignment:ATTTACATAACAA--
ATTTGCATAACAATG
 G T C A G C A T G A C T C G A T T C G A G T A C C G T A G C A T C T G A G C T A A T G C C T G A C T G A A C G T A C G T
G C T A G C A T G A C T G C A T T C A G G T A C G C T A G C A T C T G A G C T A T A G C G C T A C T G A C G A T C T A G

Pou5f1::Sox2/MA0142.1/Jaspar

Match Rank:2
Score:0.92
Offset:0
Orientation:reverse strand
Alignment:ATTTACATAACAA--
ATTTGCATAACAAAG
 G T C A G C A T G A C T C G A T T C G A G T A C C G T A G C A T C T G A G C T A A T G C C T G A C T G A A C G T A C G T
G T C A G A C T G A C T G C A T T C A G T G A C G C T A C G A T C T G A G C T A A T G C G T C A T C G A C G T A T C A G

POU3F1/MA0786.1/Jaspar

Match Rank:3
Score:0.77
Offset:-2
Orientation:reverse strand
Alignment:--ATTTACATAACAA
TAATTTGCATAA---
 A C G T A C G T G T C A G C A T G A C T C G A T T C G A G T A C C G T A G C A T C T G A G C T A A T G C C T G A C T G A
C G A T G T C A G C T A G C A T G C A T G C A T T C A G G T A C C T G A G A C T C G T A G C T A A C G T A C G T A C G T

Oct4(POU,Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer

Match Rank:4
Score:0.76
Offset:0
Orientation:forward strand
Alignment:ATTTACATAACAA
ATTTGCATAA---
 G T C A G C A T G A C T C G A T T C G A G T A C C G T A G C A T C T G A G C T A A T G C C T G A C T G A
C G T A A C G T A G C T C G A T C T A G G T A C C G T A A G C T C G T A G C T A A C G T A C G T A C G T

POU5F1B/MA0792.1/Jaspar

Match Rank:5
Score:0.75
Offset:0
Orientation:reverse strand
Alignment:ATTTACATAACAA
ATTTGCATA----
 G T C A G C A T G A C T C G A T T C G A G T A C C G T A G C A T C T G A G C T A A T G C C T G A C T G A
G C T A G C A T G C A T G C A T T C A G G T A C T C G A G C A T C T G A A C G T A C G T A C G T A C G T

POU3F2/MA0787.1/Jaspar

Match Rank:6
Score:0.75
Offset:-2
Orientation:reverse strand
Alignment:--ATTTACATAACAA
TAATTTGCATAA---
 A C G T A C G T G T C A G C A T G A C T C G A T T C G A G T A C C G T A G C A T C T G A G C T A A T G C C T G A C T G A
C G A T T G C A G C T A C G A T G C A T C G A T T C A G G T A C C T G A A G C T C G T A G C T A A C G T A C G T A C G T

POU2F1/MA0785.1/Jaspar

Match Rank:7
Score:0.74
Offset:-1
Orientation:reverse strand
Alignment:-ATTTACATAACAA
AATTTGCATANT--
 A C G T G T C A G C A T G A C T C G A T T C G A G T A C C G T A G C A T C T G A G C T A A T G C C T G A C T G A
G T C A G C T A G C A T G A C T G C A T T C A G G T A C T C G A G C A T C T G A G C A T C G A T A C G T A C G T

Brn1(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer

Match Rank:8
Score:0.74
Offset:-3
Orientation:reverse strand
Alignment:---ATTTACATAACAA
BTVATTWGCATA----
 A C G T A C G T A C G T G T C A G C A T G A C T C G A T T C G A G T A C C G T A G C A T C T G A G C T A A T G C C T G A C T G A
A G T C C A G T T G C A G T C A A C G T A G C T C G A T T C A G G T A C C G T A A C G T C T G A A C G T A C G T A C G T A C G T

POU3F4/MA0789.1/Jaspar

Match Rank:9
Score:0.73
Offset:0
Orientation:reverse strand
Alignment:ATTTACATAACAA
ATTTGCATA----
 G T C A G C A T G A C T C G A T T C G A G T A C C G T A G C A T C T G A G C T A A T G C C T G A C T G A
G C T A G C A T C G A T G C A T T C A G G T A C C G T A G A C T C G T A A C G T A C G T A C G T A C G T

Pou2f3/MA0627.1/Jaspar

Match Rank:10
Score:0.73
Offset:-4
Orientation:reverse strand
Alignment:----ATTTACATAACAA
TNTAATTTGCATACNA-
 A C G T A C G T A C G T A C G T G T C A G C A T G A C T C G A T T C G A G T A C C G T A G C A T C T G A G C T A A T G C C T G A C T G A
A C G T G A T C C A G T T G C A G C T A C G A T G C A T C G A T C T A G G T A C C T G A C G A T C T G A G T A C C G T A T C G A A C G T