Information for 6-YWTRGCTTAASTY (Motif 8)

A G T C G C A T A C G T C T A G A C T G A G T C A C G T A C G T C G T A C G T A A T C G C G A T A G T C
Reverse Opposite:
C T A G C G T A A T G C A C G T C G A T C G T A C G T A A C T G A G T C A G T C G T C A C G T A C T A G
p-value:1e-13
log p-value:-3.052e+01
Information Content per bp:1.841
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif1.06%
Number of Background Sequences with motif3.1
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets48.7 +/- 18.9bp
Average Position of motif in Background75.3 +/- 14.7bp
Strand Bias (log2 ratio + to - strand density)0.4
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer

Match Rank:1
Score:0.62
Offset:3
Orientation:reverse strand
Alignment:YWTRGCTTAASTY
---GGATTAGC--
 A G T C G C A T A C G T C T A G A C T G A G T C A C G T A C G T C G T A C G T A A T C G C G A T A G T C
A C G T A C G T A C G T T C A G T A C G T G C A C A G T G C A T C G T A C T A G T A G C A C G T A C G T

Pitx1/MA0682.1/Jaspar

Match Rank:2
Score:0.61
Offset:2
Orientation:reverse strand
Alignment:YWTRGCTTAASTY
--GGGATTAA---
 A G T C G C A T A C G T C T A G A C T G A G T C A C G T A C G T C G T A C G T A A T C G C G A T A G T C
A C G T A C G T C A T G C T A G C T A G G T C A C G A T A G C T C G T A C T G A A C G T A C G T A C G T

PITX3/MA0714.1/Jaspar

Match Rank:3
Score:0.60
Offset:2
Orientation:reverse strand
Alignment:YWTRGCTTAASTY
--GGGATTANN--
 A G T C G C A T A C G T C T A G A C T G A G T C A C G T A C G T C G T A C G T A A T C G C G A T A G T C
A C G T A C G T C T A G T C A G C A T G G T C A A G C T G A C T C G T A C T G A A T C G A C G T A C G T

RHOXF1/MA0719.1/Jaspar

Match Rank:4
Score:0.59
Offset:2
Orientation:reverse strand
Alignment:YWTRGCTTAASTY
--NGGATTAN---
 A G T C G C A T A C G T C T A G A C T G A G T C A C G T A C G T C G T A C G T A A T C G C G A T A G T C
A C G T A C G T C A T G C T A G A C T G G T C A A C G T G A C T G C T A C G A T A C G T A C G T A C G T

Otx2(Homeobox)/EpiLC-Otx2-ChIP-Seq(GSE56098)/Homer

Match Rank:5
Score:0.59
Offset:1
Orientation:reverse strand
Alignment:YWTRGCTTAASTY
-VRGGATTARN--
 A G T C G C A T A C G T C T A G A C T G A G T C A C G T A C G T C G T A C G T A A T C G C G A T A G T C
A C G T T C G A C T A G C T A G C T A G G T C A A C G T C G A T C G T A C T G A T A G C A C G T A C G T

PB0081.1_Tcf1_1/Jaspar

Match Rank:6
Score:0.59
Offset:0
Orientation:forward strand
Alignment:YWTRGCTTAASTY----
ACTTAGTTAACTAAAAA
 A G T C G C A T A C G T C T A G A C T G A G T C A C G T A C G T C G T A C G T A A T C G C G A T A G T C A C G T A C G T A C G T A C G T
T G C A G A T C A G C T G A C T T C G A C T A G G A C T C G A T G C T A C G T A A G T C G A C T C T G A T C G A C T G A G T C A C T G A

PH0124.1_Obox5_1/Jaspar

Match Rank:7
Score:0.58
Offset:-2
Orientation:forward strand
Alignment:--YWTRGCTTAASTY--
TAGAGGGATTAAATTTC
 A C G T A C G T A G T C G C A T A C G T C T A G A C T G A G T C A C G T A C G T C G T A C G T A A T C G C G A T A G T C A C G T A C G T
G C A T C T G A T C A G T C G A T C A G C T A G C A T G C G T A A C G T C G A T C G T A C G T A G C T A G A C T A G C T G C A T G T A C

PH0167.1_Tcf1/Jaspar

Match Rank:8
Score:0.58
Offset:0
Orientation:forward strand
Alignment:YWTRGCTTAASTY----
CCTTAGTTAACTAAAAT
 A G T C G C A T A C G T C T A G A C T G A G T C A C G T A C G T C G T A C G T A A T C G C G A T A G T C A C G T A C G T A C G T A C G T
G A T C A T G C A C G T A G C T T C A G A T C G G A C T G C A T C G T A C G T A A T G C G A C T C T G A T G C A C G T A C T G A A C G T

OTX2/MA0712.1/Jaspar

Match Rank:9
Score:0.58
Offset:2
Orientation:reverse strand
Alignment:YWTRGCTTAASTY
--NGGATTAA---
 A G T C G C A T A C G T C T A G A C T G A G T C A C G T A C G T C G T A C G T A A T C G C G A T A G T C
A C G T A C G T T G C A T C A G C T A G G T C A A C G T G C A T C G T A C T G A A C G T A C G T A C G T

PH0125.1_Obox5_2/Jaspar

Match Rank:10
Score:0.58
Offset:-2
Orientation:reverse strand
Alignment:--YWTRGCTTAASTY--
NANAGGGATTAATTATN
 A C G T A C G T A G T C G C A T A C G T C T A G A C T G A G T C A C G T A C G T C G T A C G T A A T C G C G A T A G T C A C G T A C G T
T C G A C T G A T C A G T C G A T C A G T C A G A C T G G C T A A C G T C G A T C G T A C G T A G C A T G A C T T C G A G C A T T G A C