Information for 22-RGCKDAACAA (Motif 37)

C T G A C T A G T A G C A C G T C G T A C G T A C T G A G T A C C T G A C G T A
Reverse Opposite:
A C G T A G C T A C T G A G C T A C G T G C A T G T C A A T C G A G T C G A C T
p-value:1e-4
log p-value:-1.059e+01
Information Content per bp:1.670
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif1.06%
Number of Background Sequences with motif57.9
Percentage of Background Sequences with motif0.13%
Average Position of motif in Targets53.6 +/- 33.8bp
Average Position of motif in Background55.2 +/- 32.0bp
Strand Bias (log2 ratio + to - strand density)0.4
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

MF0011.1_HMG_class/Jaspar

Match Rank:1
Score:0.69
Offset:5
Orientation:reverse strand
Alignment:RGCKDAACAA-
-----AACAAT
 C T G A C T A G T A G C A C G T C G T A C G T A C T G A G T A C C T G A C G T A A C G T
A C G T A C G T A C G T A C G T A C G T T C G A C G T A G A T C C T G A T G C A C G A T

Sox5/MA0087.1/Jaspar

Match Rank:2
Score:0.69
Offset:4
Orientation:reverse strand
Alignment:RGCKDAACAA-
----NAACAAT
 C T G A C T A G T A G C A C G T C G T A C G T A C T G A G T A C C T G A C G T A A C G T
A C G T A C G T A C G T A C G T G C A T C G T A C T G A A G T C C G T A G T C A A C G T

SRY/MA0084.1/Jaspar

Match Rank:3
Score:0.69
Offset:2
Orientation:forward strand
Alignment:RGCKDAACAA-
--GTAAACAAT
 C T G A C T A G T A G C A C G T C G T A C G T A C T G A G T A C C T G A C G T A A C G T
A C G T A C G T A C T G C G A T C G T A C G T A C G T A A G T C C G T A C T G A C G A T

Foxj3/MA0851.1/Jaspar

Match Rank:4
Score:0.68
Offset:-3
Orientation:forward strand
Alignment:---RGCKDAACAA----
AAAAAGTAAACAAACAC
 A C G T A C G T A C G T C T G A C T A G T A G C A C G T C G T A C G T A C T G A G T A C C T G A C G T A A C G T A C G T A C G T A C G T
G C T A C T G A G T C A C G T A C T G A T C A G G A C T G T C A G C T A C G T A A G T C C G T A G C T A G C T A T A G C T G A C G T A C

PB0017.1_Foxj3_1/Jaspar

Match Rank:5
Score:0.68
Offset:-3
Orientation:forward strand
Alignment:---RGCKDAACAA----
AAAAAGTAAACAAACAC
 A C G T A C G T A C G T C T G A C T A G T A G C A C G T C G T A C G T A C T G A G T A C C T G A C G T A A C G T A C G T A C G T A C G T
G C T A C T G A G T C A C G T A C T G A T C A G G A C T G T C A G C T A C G T A A G T C C G T A G C T A G C T A T A G C T G A C G T A C

PB0070.1_Sox30_1/Jaspar

Match Rank:6
Score:0.66
Offset:1
Orientation:forward strand
Alignment:RGCKDAACAA-------
-AATGAACAATGGAATT
 C T G A C T A G T A G C A C G T C G T A C G T A C T G A G T A C C T G A C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T C T G A G C A T C A G T A T C G T C G A C G T A A G T C G C T A C T G A C G A T C A T G T C A G G C T A G T C A G A C T G A C T

Foxj2/MA0614.1/Jaspar

Match Rank:7
Score:0.65
Offset:2
Orientation:forward strand
Alignment:RGCKDAACAA
--GTAAACAA
 C T G A C T A G T A G C A C G T C G T A C G T A C T G A G T A C C T G A C G T A
A C G T A C G T C T A G G C A T G T C A C G T A C G T A A G T C C G T A C G T A

PB0065.1_Sox15_1/Jaspar

Match Rank:8
Score:0.65
Offset:0
Orientation:forward strand
Alignment:RGCKDAACAA-------
TAGTGAACAATAGATTT
 C T G A C T A G T A G C A C G T C G T A C G T A C T G A G T A C C T G A C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T
G C A T C T A G C A T G C G A T C A T G C T G A C G T A G A T C C G T A C G T A G C A T C G T A C T A G C T G A A G C T G C A T A C G T

Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer

Match Rank:9
Score:0.65
Offset:3
Orientation:reverse strand
Alignment:RGCKDAACAA---
---RNAACAATGG
 C T G A C T A G T A G C A C G T C G T A C G T A C T G A G T A C C T G A C G T A A C G T A C G T A C G T
A C G T A C G T A C G T T C G A T C A G T C G A T C G A A T G C C G T A T C G A G C A T C A T G T A C G

PB0071.1_Sox4_1/Jaspar

Match Rank:10
Score:0.64
Offset:0
Orientation:forward strand
Alignment:RGCKDAACAA-------
AGAAGAACAAAGGACTA
 C T G A C T A G T A G C A C G T C G T A C G T A C T G A G T A C C T G A C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T
G T C A A C T G C T G A C G T A C T A G T C G A C G T A A G T C C G T A C G T A C G T A C T A G T C A G T C G A A G T C G C A T G C T A