Information for 14-GCCTCTCTGCCAGCTC (Motif 36)

A C T G A G T C A G T C A C G T A G T C A C G T A G T C A C G T A C T G A G T C A G T C C G T A A C T G A G T C A C G T A G T C
Reverse Opposite:
A C T G C G T A A C T G A G T C A C G T A C T G A C T G A G T C C G T A A C T G C G T A A C T G C G T A A C T G A C T G A G T C
p-value:1e-5
log p-value:-1.243e+01
Information Content per bp:1.530
Number of Target Sequences with motif3.0
Percentage of Target Sequences with motif0.45%
Number of Background Sequences with motif2.9
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets38.7 +/- 19.6bp
Average Position of motif in Background70.4 +/- 16.5bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

SMAD2::SMAD3::SMAD4/MA0513.1/Jaspar

Match Rank:1
Score:0.59
Offset:2
Orientation:forward strand
Alignment:GCCTCTCTGCCAGCTC
--CTGTCTGTCACCT-
 A C T G A G T C A G T C A C G T A G T C A C G T A G T C A C G T A C T G A G T C A G T C C G T A A C T G A G T C A C G T A G T C
A C G T A C G T T A G C G C A T T C A G A C G T A G T C A C G T T A C G C A G T A T G C G C T A T A G C G A T C G A C T A C G T

Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:2
Score:0.58
Offset:-1
Orientation:reverse strand
Alignment:-GCCTCTCTGCCAGCTC
TGGCAGNCTGCCAG---
 A C G T A C T G A G T C A G T C A C G T A G T C A C G T A G T C A C G T A C T G A G T C A G T C C G T A A C T G A G T C A C G T A G T C
C A G T A C T G A T C G T G A C G C T A A C T G T A G C G T A C C G A T A C T G T A G C G T A C G C T A T C A G A C G T A C G T A C G T

Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer

Match Rank:3
Score:0.54
Offset:3
Orientation:reverse strand
Alignment:GCCTCTCTGCCAGCTC
---TGTCTGDCACCT-
 A C T G A G T C A G T C A C G T A G T C A C G T A G T C A C G T A C T G A G T C A G T C C G T A A C T G A G T C A C G T A G T C
A C G T A C G T A C G T G C A T A C T G C G A T A G T C A C G T T A C G C A T G A G T C C G T A T A G C G A T C G A C T A C G T

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:4
Score:0.54
Offset:6
Orientation:forward strand
Alignment:GCCTCTCTGCCAGCTC
------TTGCCAAG--
 A C T G A G T C A G T C A C G T A G T C A C G T A G T C A C G T A C T G A G T C A G T C C G T A A C T G A G T C A C G T A G T C
A C G T A C G T A C G T A C G T A C G T A C G T A G C T A C G T A C T G A T G C A G T C C G T A C T G A T A C G A C G T A C G T

NF1(CTF)/LNCAP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:5
Score:0.54
Offset:-3
Orientation:forward strand
Alignment:---GCCTCTCTGCCAGCTC
CTTGGCANNNTGCCAA---
 A C G T A C G T A C G T A C T G A G T C A G T C A C G T A G T C A C G T A G T C A C G T A C T G A G T C A G T C C G T A A C T G A G T C A C G T A G T C
A G T C G A C T C A G T A C T G C T A G T G A C G C T A A T G C G C A T A T C G C G A T A C T G G A T C G T A C G T C A C T G A A C G T A C G T A C G T

Hic1/MA0739.1/Jaspar

Match Rank:6
Score:0.54
Offset:6
Orientation:forward strand
Alignment:GCCTCTCTGCCAGCTC
------ATGCCAACC-
 A C T G A G T C A G T C A C G T A G T C A C G T A G T C A C G T A C T G A G T C A G T C C G T A A C T G A G T C A C G T A G T C
A C G T A C G T A C G T A C G T A C G T A C G T T C G A A G C T T C A G T A G C G T A C G T C A T C G A A T G C A G T C A C G T

Tgif2(Homeobox)/mES-Tgif2-ChIP-Seq(GSE55404)/Homer

Match Rank:7
Score:0.53
Offset:7
Orientation:forward strand
Alignment:GCCTCTCTGCCAGCTC
-------TGTCANYT-
 A C T G A G T C A G T C A C G T A G T C A C G T A G T C A C G T A C T G A G T C A G T C C G T A A C T G A G T C A C G T A G T C
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G C T C A T G G C A T G A T C T G C A C T A G G A T C A C G T A C G T

NFIC::TLX1/MA0119.1/Jaspar

Match Rank:8
Score:0.52
Offset:-2
Orientation:reverse strand
Alignment:--GCCTCTCTGCCAGCTC
TTGGCATGGTGCCA----
 A C G T A C G T A C T G A G T C A G T C A C G T A G T C A C G T A G T C A C G T A C T G A G T C A G T C C G T A A C T G A G T C A C G T A G T C
G A C T A C G T A C T G A C T G A G T C C G T A G A C T A T C G A T C G C A G T A C T G A G T C A G T C C G T A A C G T A C G T A C G T A C G T

NFIC/MA0161.1/Jaspar

Match Rank:9
Score:0.51
Offset:7
Orientation:reverse strand
Alignment:GCCTCTCTGCCAGCTC
-------TGCCAA---
 A C T G A G T C A G T C A C G T A G T C A C G T A G T C A C G T A C T G A G T C A G T C C G T A A C T G A G T C A C G T A G T C
A C G T A C G T A C G T A C G T A C G T A C G T A C G T G C A T C A T G G A T C A G T C G T C A C T G A A C G T A C G T A C G T

PH0102.1_Meis1/Jaspar

Match Rank:10
Score:0.51
Offset:3
Orientation:reverse strand
Alignment:GCCTCTCTGCCAGCTC---
---NTATTGACAGCTNNTT
 A C T G A G T C A G T C A C G T A G T C A C G T A G T C A C G T A C T G A G T C A G T C C G T A A C T G A G T C A C G T A G T C A C G T A C G T A C G T
A C G T A C G T A C G T C T A G A C G T C G T A C G A T A C G T A C T G C G T A A G T C C T G A A C T G A T G C G A C T T A G C A T C G G C A T G C A T