Information for 6-HCCTGYTRRG (Motif 3)

G A C T A G T C A T G C C G A T C T A G A G T C C G A T C T A G C T G A A T C G
Reverse Opposite:
A T G C G A C T A G T C C G T A T C A G A G T C C G T A A T C G A C T G C T G A
p-value:1e-16
log p-value:-3.748e+01
Information Content per bp:1.681
Number of Target Sequences with motif66.0
Percentage of Target Sequences with motif9.98%
Number of Background Sequences with motif1366.8
Percentage of Background Sequences with motif3.01%
Average Position of motif in Targets49.4 +/- 24.9bp
Average Position of motif in Background50.4 +/- 31.5bp
Strand Bias (log2 ratio + to - strand density)0.1
Multiplicity (# of sites on avg that occur together)1.03
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:1
Score:0.83
Offset:-2
Orientation:reverse strand
Alignment:--HCCTGYTRRG
CCCCCTGCTGTG
 A C G T A C G T G A C T A G T C A T G C C G A T C T A G A G T C C G A T C T A G C T G A A T C G
G A T C G A T C G A T C G T A C G T A C G C A T C T A G A G T C G C A T A C T G C G A T A C T G

Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer

Match Rank:2
Score:0.81
Offset:-4
Orientation:forward strand
Alignment:----HCCTGYTRRG-
GGCCYCCTGCTGDGH
 A C G T A C G T A C G T A C G T G A C T A G T C A T G C C G A T C T A G A G T C C G A T C T A G C T G A A T C G A C G T
C A T G T A C G T A G C G A T C G A T C A T G C G T A C G A C T T C A G A T G C C G A T A T C G C A G T A C T G G T A C

PB0205.1_Zic1_2/Jaspar

Match Rank:3
Score:0.78
Offset:-2
Orientation:reverse strand
Alignment:--HCCTGYTRRG---
TNTCCTGCTGTGNNG
 A C G T A C G T G A C T A G T C A T G C C G A T C T A G A G T C C G A T C T A G C T G A A T C G A C G T A C G T A C G T
G C A T A G T C C A G T T G A C G T A C G A C T T C A G A G T C C G A T C T A G A G C T A C T G G C A T C A T G T C A G

PB0206.1_Zic2_2/Jaspar

Match Rank:4
Score:0.77
Offset:-2
Orientation:reverse strand
Alignment:--HCCTGYTRRG---
TCNCCTGCTGNGNNN
 A C G T A C G T G A C T A G T C A T G C C G A T C T A G A G T C C G A T C T A G C T G A A T C G A C G T A C G T A C G T
G C A T A G T C A C G T T G A C T G A C G A C T T C A G A G T C C G A T C T A G A G C T A C T G G A C T C A T G C T A G

Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer

Match Rank:5
Score:0.76
Offset:1
Orientation:forward strand
Alignment:HCCTGYTRRG-
-CCTGCTGAGH
 G A C T A G T C A T G C C G A T C T A G A G T C C G A T C T A G C T G A A T C G A C G T
A C G T A G T C G T A C A G C T C T A G A G T C C G A T A C T G C G T A A C T G G T C A

PB0207.1_Zic3_2/Jaspar

Match Rank:6
Score:0.74
Offset:-2
Orientation:reverse strand
Alignment:--HCCTGYTRRG---
NNTCCTGCTGTGNNN
 A C G T A C G T G A C T A G T C A T G C C G A T C T A G A G T C C G A T C T A G C T G A A T C G A C G T A C G T A C G T
G C A T A T C G C A G T T G A C T G A C G A C T T C A G A G T C C G A T C T A G G A C T A C T G G A T C G C A T G T A C

SNAI2/MA0745.1/Jaspar

Match Rank:7
Score:0.72
Offset:-2
Orientation:reverse strand
Alignment:--HCCTGYTRRG
NCACCTGTN---
 A C G T A C G T G A C T A G T C A T G C C G A T C T A G A G T C C G A T C T A G C T G A A T C G
T C G A G T A C C T G A G A T C G A T C C G A T C A T G G A C T G A C T A C G T A C G T A C G T

ZEB1(Zf)/PDAC-ZEB1-ChIP-Seq(GSE64557)/Homer

Match Rank:8
Score:0.71
Offset:-4
Orientation:reverse strand
Alignment:----HCCTGYTRRG
RYHYACCTGB----
 A C G T A C G T A C G T A C G T G A C T A G T C A T G C C G A T C T A G A G T C C G A T C T A G C T G A A T C G
T C A G A G C T G C T A A G T C C G T A G T A C A T G C A C G T A C T G A C G T A C G T A C G T A C G T A C G T

SPDEF(ETS)/VCaP-SPDEF-ChIP-Seq(SRA014231)/Homer

Match Rank:9
Score:0.70
Offset:-3
Orientation:forward strand
Alignment:---HCCTGYTRRG
ACATCCTGNT---
 A C G T A C G T A C G T G A C T A G T C A T G C C G A T C T A G A G T C C G A T C T A G C T G A A T C G
C T G A A T G C C G T A A C G T A G T C A G T C A C G T A C T G A T C G G C A T A C G T A C G T A C G T

Slug(Zf)/Mesoderm-Snai2-ChIP-Seq(GSE61475)/Homer

Match Rank:10
Score:0.70
Offset:-4
Orientation:forward strand
Alignment:----HCCTGYTRRG
SNGCACCTGCHS--
 A C G T A C G T A C G T A C G T G A C T A G T C A T G C C G A T C T A G A G T C C G A T C T A G C T G A A T C G
T A C G C T A G T A C G A G T C C G T A A G T C A G T C A C G T A C T G A G T C G A T C T A G C A C G T A C G T