Information for 16-CAATSCATTTKMA (Motif 23)

A G T C G T C A C G T A A C G T A T C G A G T C C G T A A C G T A C G T C G A T C A T G G T A C C G T A
Reverse Opposite:
A C G T A C T G G T A C C G T A C G T A C G T A A C G T A C T G T A C G C G T A A C G T A C G T A C T G
p-value:1e-11
log p-value:-2.543e+01
Information Content per bp:1.887
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.91%
Number of Background Sequences with motif3.2
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets42.5 +/- 19.1bp
Average Position of motif in Background41.5 +/- 21.9bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

POU2F2/MA0507.1/Jaspar

Match Rank:1
Score:0.62
Offset:3
Orientation:forward strand
Alignment:CAATSCATTTKMA---
---TTCATTTGCATAT
 A G T C G T C A C G T A A C G T A T C G A G T C C G T A A C G T A C G T C G A T C A T G G T A C C G T A A C G T A C G T A C G T
A C G T A C G T A C G T G A C T C A G T G T A C G C T A A C G T G C A T A C G T C T A G A G T C G T C A A G C T C T G A G C A T

Oct6(POU,Homeobox)/NPC-Pou3f1-ChIP-Seq(GSE35496)/Homer

Match Rank:2
Score:0.60
Offset:3
Orientation:reverse strand
Alignment:CAATSCATTTKMA--
---CTCATTTGCATW
 A G T C G T C A C G T A A C G T A T C G A G T C C G T A A C G T A C G T C G A T C A T G G T A C C G T A A C G T A C G T
A C G T A C G T A C G T A G T C G C A T T G A C G T C A A C G T A G C T C G A T T C A G T G A C G C T A G C A T C G T A

OCT:OCT(POU,Homeobox)/NPC-OCT6-ChIP-Seq(GSE43916)/Homer

Match Rank:3
Score:0.60
Offset:1
Orientation:forward strand
Alignment:CAATSCATTTKMA---
-YATGCATATRCATRT
 A G T C G T C A C G T A A C G T A T C G A G T C C G T A A C G T A C G T C G A T C A T G G T A C C G T A A C G T A C G T A C G T
A C G T G A T C C G T A G A C T C T A G G A T C C T G A G A C T C T G A G A C T C T A G G A T C C T G A G A C T C T G A G A C T

OCT:OCT(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer

Match Rank:4
Score:0.59
Offset:-1
Orientation:reverse strand
Alignment:-CAATSCATTTKMA-
CTCATGAATATTCAT
 A C G T A G T C G T C A C G T A A C G T A T C G A G T C C G T A A C G T A C G T C G A T C A T G G T A C C G T A A C G T
T A G C G A C T G A T C C G T A A C G T T C A G G T C A C G T A A C G T C G T A C G A T A C G T A G T C C G T A C G A T

PB0068.1_Sox1_1/Jaspar

Match Rank:5
Score:0.59
Offset:-3
Orientation:forward strand
Alignment:---CAATSCATTTKMA
AATCAATTCAATAATT
 A C G T A C G T A C G T A G T C G T C A C G T A A C G T A T C G A G T C C G T A A C G T A C G T C G A T C A T G G T A C C G T A
G C A T C G T A C A G T G A T C G C T A G C T A G C A T C G A T T A G C G C T A G C T A G C A T C G T A G T C A C G A T A C G T

PH0114.1_Nkx2-5/Jaspar

Match Rank:6
Score:0.59
Offset:0
Orientation:forward strand
Alignment:CAATSCATTTKMA---
TAAGCCACTTGAATTT
 A G T C G T C A C G T A A C G T A T C G A G T C C G T A A C G T A C G T C G A T C A T G G T A C C G T A A C G T A C G T A C G T
G A C T C T G A C T G A C A T G T A G C A G T C G C T A G T A C A C G T G A C T T C A G C G T A T C G A G C A T G A C T A G C T

Oct4(POU,Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer

Match Rank:7
Score:0.59
Offset:6
Orientation:forward strand
Alignment:CAATSCATTTKMA---
------ATTTGCATAA
 A G T C G T C A C G T A A C G T A T C G A G T C C G T A A C G T A C G T C G A T C A T G G T A C C G T A A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T C G T A A C G T A G C T C G A T C T A G G T A C C G T A A G C T C G T A G C T A

Oct2(POU,Homeobox)/Bcell-Oct2-ChIP-Seq(GSE21512)/Homer

Match Rank:8
Score:0.58
Offset:6
Orientation:reverse strand
Alignment:CAATSCATTTKMA---
------ATTTGCATAT
 A G T C G T C A C G T A A C G T A T C G A G T C C G T A A C G T A C G T C G A T C A T G G T A C C G T A A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T G C T A C G A T G A C T A C G T C T A G G A T C G T C A C G A T C G T A C A G T

Pit1(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer

Match Rank:9
Score:0.58
Offset:2
Orientation:forward strand
Alignment:CAATSCATTTKMA
--ATGMATATDC-
 A G T C G T C A C G T A A C G T A T C G A G T C C G T A A C G T A C G T C G A T C A T G G T A C C G T A
A C G T A C G T G C T A A C G T C T A G G T A C G C T A G A C T C T G A G C A T C A T G G A T C A C G T

PB0091.1_Zbtb3_1/Jaspar

Match Rank:10
Score:0.58
Offset:-5
Orientation:forward strand
Alignment:-----CAATSCATTTKMA
AATCGCACTGCATTCCG-
 A C G T A C G T A C G T A C G T A C G T A G T C G T C A C G T A A C G T A T C G A G T C C G T A A C G T A C G T C G A T C A T G G T A C C G T A
C T G A C T G A A C G T A T G C A T C G G T A C C T G A A T G C C G A T A C T G A T G C G T C A A G C T A C G T A T G C A T G C A C T G A C G T