Information for 11-CTAAYCTYYTCAC (Motif 13)

A G T C C G A T C G T A C G T A A G C T A G T C A C G T A G T C A G C T A C G T A G T C C G T A A G T C
Reverse Opposite:
C T A G A C G T A C T G C G T A C T G A C T A G C G T A A C T G T C G A A C G T A C G T C G T A A C T G
p-value:1e-12
log p-value:-2.786e+01
Information Content per bp:1.893
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.91%
Number of Background Sequences with motif2.6
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets48.3 +/- 14.9bp
Average Position of motif in Background58.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Crx/MA0467.1/Jaspar

Match Rank:1
Score:0.67
Offset:0
Orientation:reverse strand
Alignment:CTAAYCTYYTCAC
CTAATCCTCTT--
 A G T C C G A T C G T A C G T A A G C T A G T C A C G T A G T C A G C T A C G T A G T C C G T A A G T C
G A T C C G A T C T G A C G T A A C G T A G T C G A T C A G C T G A T C G A C T A G C T A C G T A C G T

DUX4/MA0468.1/Jaspar

Match Rank:2
Score:0.62
Offset:1
Orientation:forward strand
Alignment:CTAAYCTYYTCAC
-TAATTTAATCA-
 A G T C C G A T C G T A C G T A A G C T A G T C A C G T A G T C A G C T A C G T A G T C C G T A A G T C
A C G T G C A T C T G A C G T A G A C T A G C T A G C T G T C A C G T A A C G T A G T C C G T A A C G T

Nr2f6(var.2)/MA0728.1/Jaspar

Match Rank:3
Score:0.60
Offset:1
Orientation:reverse strand
Alignment:CTAAYCTYYTCAC---
-TGACCTTTTGACCTC
 A G T C C G A T C G T A C G T A A G C T A G T C A C G T A G T C A G C T A C G T A G T C C G T A A G T C A C G T A C G T A C G T
A C G T A G C T C T A G C G T A G T A C A G T C A C G T G A C T G C A T C A G T T C A G G T C A A G T C A G T C G A C T A G T C

GSC(Homeobox)/FrogEmbryos-GSC-ChIP-Seq(DRA000576)/Homer

Match Rank:4
Score:0.60
Offset:0
Orientation:reverse strand
Alignment:CTAAYCTYYTCAC
YTAATCCY-----
 A G T C C G A T C G T A C G T A A G C T A G T C A C G T A G T C A G C T A C G T A G T C C G T A A G T C
G A T C G C A T C G T A C G T A A C G T G A T C G A T C A G T C A C G T A C G T A C G T A C G T A C G T

DUXA/MA0884.1/Jaspar

Match Rank:5
Score:0.60
Offset:0
Orientation:forward strand
Alignment:CTAAYCTYYTCAC
CTAATTTAATCAA
 A G T C C G A T C G T A C G T A A G C T A G T C A C G T A G T C A G C T A C G T A G T C C G T A A G T C
G A T C G A C T C T G A T C G A G A C T A G C T A G C T T G C A C T G A A C G T A G T C C G T A C T G A

CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer

Match Rank:6
Score:0.59
Offset:-1
Orientation:forward strand
Alignment:-CTAAYCTYYTCAC
GCTAATCC------
 A C G T A G T C C G A T C G T A C G T A A G C T A G T C A C G T A G T C A G C T A C G T A G T C C G T A A G T C
A T C G G A T C G C A T C G T A G T C A A C G T A T G C A G T C A C G T A C G T A C G T A C G T A C G T A C G T

Rarb/MA0857.1/Jaspar

Match Rank:7
Score:0.58
Offset:1
Orientation:reverse strand
Alignment:CTAAYCTYYTCAC----
-TGACCTTTTGACCTTT
 A G T C C G A T C G T A C G T A A G C T A G T C A C G T A G T C A G C T A C G T A G T C C G T A A G T C A C G T A C G T A C G T A C G T
A C G T G A C T T C A G T C G A T G A C A G T C A G C T G A C T C G A T A G C T T A C G G T C A T G A C G T A C A G C T G A C T C G A T

Otx2(Homeobox)/EpiLC-Otx2-ChIP-Seq(GSE56098)/Homer

Match Rank:8
Score:0.58
Offset:-1
Orientation:forward strand
Alignment:-CTAAYCTYYTCAC
NYTAATCCYB----
 A C G T A G T C C G A T C G T A C G T A A G C T A G T C A C G T A G T C A G C T A C G T A G T C C G T A A G T C
A T C G G A C T C G A T C G T A C G T A C A G T G A T C G A T C G A T C A G C T A C G T A C G T A C G T A C G T

GSC/MA0648.1/Jaspar

Match Rank:9
Score:0.58
Offset:-1
Orientation:forward strand
Alignment:-CTAAYCTYYTCAC
GCTAATCCCC----
 A C G T A G T C C G A T C G T A C G T A A G C T A G T C A C G T A G T C A G C T A C G T A G T C C G T A A G T C
T A C G G A T C A G C T C T G A C G T A A C G T A G T C A G T C A T G C G A T C A C G T A C G T A C G T A C G T

DUX4(Homeobox)/Myoblasts-DUX4.V5-ChIP-Seq(GSE75791)/Homer

Match Rank:10
Score:0.57
Offset:-1
Orientation:forward strand
Alignment:-CTAAYCTYYTCAC-
NWTAAYCYAATCAWN
 A C G T A G T C C G A T C G T A C G T A A G C T A G T C A C G T A G T C A G C T A C G T A G T C C G T A A G T C A C G T
C A T G G C A T C G A T C G T A C G T A G A T C A G T C A G C T C G T A C G T A A C G T A G T C C G T A C G T A G C A T